Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2857 ATGGACTCCGACAAGGATATGCATGATGCTAATGACCTTGAATCCCTTGACAACAATTACTACCGTGGTGGCACGGAGGATGCTGCCATGAATTATTATAGTGATTACAATGACGATGCCGATGATTACTTCGACGAAGCTGATGATCTCGAAAGGCTCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATCTTAAAGGAATTAGATATCCAACAAAGACAAGAGGAGGACATCACTAGGGTAGCTACAGTTCTTTCTATATCAAAAGTTGATGCCAACAAATTACTTCACCATTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAATCCGTGAAGCATTTGGTTTGATGTATAAGCCAATCATTGAGCATGTTGATGCTAGAGAGCTTACTTGCGACATCTGTTTCGAAAATCATCCACGTGCTAAGATAGAGATGACTTCTTGTCGTCATCCTTTCTGTCTCTCGTGGTGGGAGGATAAGTCTTGTGTGCTCTATTACGTGGGATATATCAGCACATCAATCACGGATGGCCCTGGCTGTTTGATGCTGAGATGTTCTAATCCCACATGTGGTGCTGCTGTTGAGCAAGATATGATTCGTTGA 627 0.429 MDSDKDMHDANDLESLDNNYYRGGTEDAAMNYYSDYNDDADDYFDEADDLERLESRRPEQNFTILKELDIQQRQEEDITRVATVLSISKVDANKLLHHYNWSVSKVHDAWFADEDRIREAFGLMYKPIIEHVDARELTCDICFENHPRAKIEMTSCRHPFCLSWWEDKSCVLYYVGYISTSITDGPGCLMLRCSNPTCGAAVEQDMIR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2857 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
Amo11g2857 208 Coils Coil 33 53 - -
Amo11g2857 208 MobiDBLite consensus disorder prediction 1 20 - -
Amo11g2857 208 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 207 - -
Amo11g2857 208 MobiDBLite consensus disorder prediction 1 15 - -
Amo11g2857 208 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 207 IPR031127 GO:0004842|GO:0016567
Amo11g2857 208 SUPERFAMILY RING/U-box 135 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2857 Amo-Chr11 139573633 139575089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2857 17 207 ARIADNE family AT1G65430 48.744 1.47e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2857 K11968 - gmx:100784195 272.322