Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2800 ATGGCCGGATCATCCTGGTTGGTAGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCAAGTGGGAAAGTTTTATGGAAAAGCAATCCTACCAGAACTTGTCCGAATTGTCAACATGTTATTGATAACAGTGATGTGGCACAAGAGTGGCCTGGATTACCAAAAGGTGTGAAATTTGATCCATCTGATCAAGAAATAATATCGCACTTGCTTGCAAAAGTTGGTGCAGCAGGTTCAGAGCCTCACCCTTTCATTGATGAATTTATTGCTACTCTTGAAGTGGATGATGGAATTTGTTATACACATCCTAAACATTTACCAGGTGTCAAGCAAGATGGTAGTGCTACACACTTTTTCCACAGATCAATCAAGGCTTATAATACCGGCAATCGAAAGCGTCGGAAAATAAATGACCAGGACTCTGGCGATGTCCGTTGGCACAAGACTGGAAAAACTAAACCTGTCYTCTCGGACGGGGTTCAGAGAGGCTGTAAAAAGATTATGGTTCTATATATGACTTCAGTTAGAGGAGTAAAAGCTGAGAAAACTAACTGGGTTATGCATCAATATCACCTCGGYACAGACGAAGATGAAAAGGAAGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAACAAGTTAAGTTTGGTGAAAAAGATGATCATGATGTTCCTGGAACCAATGAAGCAACTGTTGTGAAAGATGATCCAGTCACTTCCAAATCTCTGACTTCGGAACCTCCTCATAGTGAAAAGCAATGTTCAGATCTCGACATAGGAGAAAAAACACATCAGATTCTTCAGGGTCCTCAGACAGATTGTGTAGAAGACATTCAAGTCGAGTGTGAAGAGATTGTAAAAACTGATGTATCCATGGCAGATGCTCAAAATAATGAAGGAATGGATAATAATTTGTTAGATTCACAACAACTTGTTGAAGCATTGGCCTTGTGTGATGATCTCCTCCATAGCCAGTGTTCCAATAAGGATGATGAAAATGSAGAACACAAGGAGCACTTGAGTCTTTCCATCTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATCTTGAAGAGTGCCAAAACCTTAKTCTTGATCCTGCAAACGTAGAGCTCGAGACACCACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTRGGTTCACAGGATAGCTTTGTTTCCTTMAGCGGRGGCAAGGCAGTCGARTAA 1218 0.408 MAGSSWLVDKSRIATKIKSASGASGKVLWKSNPTRTCPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIISHLLAKVGAAGSEPHPFIDEFIATLEVDDGICYTHPKHLPGVKQDGSATHFFHRSIKAYNTGNRKRRKINDQDSGDVRWHKTGKTKPVXSDGVQRGCKKIMVLYMTSVRGVKAEKTNWVMHQYHLGTDEDEKEGEYVISKVFYQQQVKFGEKDDHDVPGTNEATVVKDDPVTSKSLTSEPPHSEKQCSDLDIGEKTHQILQGPQTDCVEDIQVECEEIVKTDVSMADAQNNEGMDNNLLDSQQLVEALALCDDLLHSQCSNKDDENXEHKEHLSLSIYAHLGPEHLKKDLEECQNLXLDPANVELETPPSEFRLSQLELGSQDSFVSXSGGKAVE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2800 405 Gene3D NAC domain 65 218 IPR036093 GO:0003677|GO:0006355
Amo11g2800 405 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Amo11g2800 405 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Amo11g2800 405 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 397 IPR044799 GO:0003700
Amo11g2800 405 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 397 - -
Amo11g2800 405 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Amo11g2800 405 MobiDBLite consensus disorder prediction 236 253 - -
Amo11g2800 405 MobiDBLite consensus disorder prediction 222 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2800 Amo-Chr11 138235827 138239772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2800 33 218 NAC Transcription Factor Family AT1G28470 57.812 1.40e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo11g2800 NAM 4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2800 - - gmx:100787422 612.838