Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2796 ATGGAAACTGGAGGAGGCTTTCACGGTTATCACAACCTTCCTACCACTACCTCTGGGTTGAAGCTATCTGTGTCAGAGATGAACATGAGAGCAGTAGAAAACAACAACACAGGAAGCAATAATAATACTCATACAGATGATAACGAATGCACTGTGAGGGAGCAAGATCGGTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTGCCACCGCACGCTAAAATCTCCGACGACGCAAAAGAAACAATACAAGAGTGCGTATCGGAGTACATCAGCTTTATCACCGGAGAAGCCAACGAGCGGTGTCAGAGGGAGCAACGGAAGACCATCACAGCGGAGGACGTTCTTTGGGCAATGAGTAAGCTTGGCTTTGACGATTACATTGAGCCTCTGACGATGTACCTTCATAGGTACCGTGAGCTTGAAGGTGACCGTACCTCCATGAGAGGAGAGCCACTTGGAAAGAGGACTGTTGACTATGGAACTCTTGGTGTTGCTGCTACTTCTGCTTTTGTTCCACAGTTTCACATTGGACATCACCATCATCATCCTCGTCCCAGTGGCTACTATGGTACACCCATGGGGAATTACATTAGAGATGCATCCAATGCTGGCTCGTCTCTTCAACCTCCTTCACTCGCTTATGCTGAACCAAATACTCAATACAAATGA 681 0.467 METGGGFHGYHNLPTTTSGLKLSVSEMNMRAVENNNTGSNNNTHTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVDYGTLGVAATSAFVPQFHIGHHHHHPRPSGYYGTPMGNYIRDASNAGSSLQPPSLAYAEPNTQYK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2796 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Amo11g2796 226 SUPERFAMILY Histone-fold 55 154 IPR009072 GO:0046982
Amo11g2796 226 Gene3D Histone, subunit A 45 160 IPR009072 GO:0046982
Amo11g2796 226 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo11g2796 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo11g2796 226 MobiDBLite consensus disorder prediction 204 226 - -
Amo11g2796 226 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Amo11g2796 226 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Amo11g2796 226 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Amo11g2796 226 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2796 Amo-Chr11 137887095 137889575 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2796 5 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.245 1.42e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo11g2796 CBFD_NFYB_HMF 6.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2796 K08065 - gmx:100800011 306.99