Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2792 ATGCATATTCCAAGTCAATCCTGGTTGCAATCTACCTCAGGGTATGAAGACATGTACAGTGAACTCGGAATTCCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCTGTGGAAGGGTCSTGGGATAGTTGGAAAACAAGAATACCATTGCAGAGGTCAGGGAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGTGTTTACCAATATAGATTTATTGTGGATGGACGGTGGAGGTACACTCCGGACTCGCCATGGACACAAGATGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTATGTTCCTGAGGACATTGAAAGCATCTCTAGTTTTGAACCTCCTCAATCACCAGACTCAAGTTATAGCAGTTTACAMCTTAGTTCTGATGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCAGTGACAAATATGGAAACGCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGAAAGAGCACTCCTTCAGTGGTTGCGCTTGGCACAACGCATCGGTTTCTTGCCAAGTACGTCACTGTGGTGCTGTACAAGTCTCTGCAGAGGTAA 636 0.4355 MHIPSQSWLQSTSGYEDMYSELGIPTMITWSYGGKEVAVEGSWDSWKTRIPLQRSGKDFTIMKVLPSGVYQYRFIVDGRWRYTPDSPWTQDDAGNAYNILDLQDYVPEDIESISSFEPPQSPDSSYSSLXLSSDDYAKEPPLVPPHLQMTLLNVPVTNMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGTTHRFLAKYVTVVLYKSLQR* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2792 211 MobiDBLite consensus disorder prediction 111 130 - -
Amo11g2792 211 SUPERFAMILY AMPKBI-like 106 208 IPR037256 -
Amo11g2792 211 Gene3D - 112 209 - -
Amo11g2792 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 211 - -
Amo11g2792 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 211 IPR043554 -
Amo11g2792 211 SUPERFAMILY E set domains 24 109 IPR014756 -
Amo11g2792 211 MobiDBLite consensus disorder prediction 114 130 - -
Amo11g2792 211 CDD E_set_AMPKbeta_like_N 25 101 - -
Amo11g2792 211 SMART AMPKBI_2 119 209 IPR006828 GO:0005515
Amo11g2792 211 Gene3D Immunoglobulins 19 106 IPR013783 -
Amo11g2792 211 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 137 207 IPR006828 GO:0005515
Amo11g2792 211 Pfam Glycogen recognition site of AMP-activated protein kinase 24 103 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2792 Amo-Chr11 137842241 137843926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2792 23 104 Protein tyrosine phosphatase (PTP) family AT3G01510 34.091 7.32e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2792 K07199 - gmx:100777497 358.221