Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2784 ATGGCTTACCATGTTTGCTCCTCCCCTTCCCTCCACTCTCTCTCACCGTCGATCGGTTCTTCGTCTTCTTCATTCAAATTCAACCACAAAGTCCGAAACTTTGCTTCCTCCTTTCAACCACCCTCCACTCCGCTAACGCCTTCTCAATCAAGAACTTTTCTCCACGCCAACTGCGTCTCGCTGCAGGAATCGGTTCTGAAGCTAGCCGAAGACGCTGACATTGAAAAAGTTTCCAAATTTGAGGACCCAATTGAAAAATCCTCGTCTTCCTCCAAGAATTACGTGTGGGTCAACCCCAAAAGCCCCCGAGCCAAACAGCTTCGGAAGAAGTCTTATAATACAAGGTACACTAATCTTGTTAAAATTGCAAACTCTTTGGACTCGTGCAACCCCACTGAGCATGATGTCTCTGAAATTCTCAAGAGCTTGGGGGATAAGGTTTTGGAGCAGGACGGTGTAATTGTTCTCAATAACATGGTGAGTTCCCAAACCGCACCTCTTGTTCTCAAATACTTTCAGAATAAGATTAGACCGTCTAGGGAGGTGATTCTTTACAATGTGACCCTCAAAGTGTTTAGGAAGTGTAAGGATTTGGATGGAGCGGAGAAGCTGTTTGATGAAATGCTTCAGAGAGGGGTCAAACCTGATAATGTTACATTCTCAACTATAATTAGCTGTGCTAGGATGTGTTCTCTGCCTGATAAGGCTGTTGAGTGGTTTGAAAAGATGCCCACCTTTGGGTGTGAGCCCGACGAAGTTACATACTCGGCCATGATTGATGCTTATGGACGAGCTGGTAATATTGACATGGCTTTGAGCCTCTATGACCGTGCCAGAACAGAGAAGTGGCGAATTGATACCGTGACTTTTGCAACATTGATTAGAATGTATGGTGTGGCCAAAAATTACGATGGGTGTTTAAATGTCTATGAAGAAATGAAGGTTCTTGGCGTTAAGCCTAACATGGTTATCTATAACACTCTGTTGGATGCCATGGGGAGAGCTAAGAGGCCATGGCAGGCCAAGAGTATATATAAAGAGATGACTAGCAATGGATTTTCACCAACTTGGGCGACCTATGCATCTCTCATACGAGCCTATGGCAGAGCACGATTCTGCGAAGATGCACTCATTGTCTATAAGGAAATGAGGGAAAGTGGGCTGGAGATGAATACACTTCTTTATAATACCCTTCTAGCTATGTGTGCTGATGTTGGCTACATAGATGAAGCATTTGAAGTTTACGAAGATATGAAAAGTTCTGGGACTTGCAATCCCGATAGTTGGACCTTCTCATCCTTGATTACCATATATTCTTGCAGTGGGATGGTTTCACAGGCTGAAAATACGTACAACGAAATGGTTGAATCTGGATTTGAGCCTACTATTTTTGTGCTGACATCACTTGTCCAGTGCTATGGAAAAGCCAAGCGTACGGATGACGTTGTGAAGACATTCAATCAACTATTAGATTTGGGACTCACTCCAGATGATCGCTTCTGTGGTTGTCTTCTGAATGTTATGACCCAAACACCAAAAGAAGAACTTGGGAAGCTAGCAAATTGTCTGGAGAAAGCTAATCCAAAGATCGGGTCTGTGGTAAGATATTTGGTGGAACAGAAGGAGGGAGATTTTAGAAGTGAAGCATCAGAACTGTTCAATTCAGTTATTGATGCGGTAAAGAAGGCCATTTGCAATTCTCTTATTGATCTCTGTGTCAACCTGGATTTGTTGGACCGAGCTTGCGAGCTTCTTGACCTGGGCTTGACACTCGAGATATATACAGAAATACAGTCCAAAACTCAAACTCAGTGGTCGTTGCATGTAAAGAGTCTCTCACTTGGAGCCGCGCTGACCGCATTTCATGTCTGGATAAAAGATTTGTCTGATGTTTTGGAATCTGGAGAGGAACTTCCACCTCTGCTTGGAATTAACACTGGGCATGGAAAGCACAAGTATTCAGATAAAGGTTTGGCGAATGTATTCGAATCACATTTGAAGGAACTGAATGCTCCATTCCACGAAGCTCCCGATAAGGCTGGCTGGTTTTTGACTACACTGGAAGCAGCTAAATCATGGCTGAAATCTAAGGGTTCGCCTGAATTAGTTGCTGAATGA 2118 0.4367 MAYHVCSSPSLHSLSPSIGSSSSSFKFNHKVRNFASSFQPPSTPLTPSQSRTFLHANCVSLQESVLKLAEDADIEKVSKFEDPIEKSSSSSKNYVWVNPKSPRAKQLRKKSYNTRYTNLVKIANSLDSCNPTEHDVSEILKSLGDKVLEQDGVIVLNNMVSSQTAPLVLKYFQNKIRPSREVILYNVTLKVFRKCKDLDGAEKLFDEMLQRGVKPDNVTFSTIISCARMCSLPDKAVEWFEKMPTFGCEPDEVTYSAMIDAYGRAGNIDMALSLYDRARTEKWRIDTVTFATLIRMYGVAKNYDGCLNVYEEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYKEMTSNGFSPTWATYASLIRAYGRARFCEDALIVYKEMRESGLEMNTLLYNTLLAMCADVGYIDEAFEVYEDMKSSGTCNPDSWTFSSLITIYSCSGMVSQAENTYNEMVESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDLGLTPDDRFCGCLLNVMTQTPKEELGKLANCLEKANPKIGSVVRYLVEQKEGDFRSEASELFNSVIDAVKKAICNSLIDLCVNLDLLDRACELLDLGLTLEIYTEIQSKTQTQWSLHVKSLSLGAALTAFHVWIKDLSDVLESGEELPPLLGINTGHGKHKYSDKGLANVFESHLKELNAPFHEAPDKAGWFLTTLEAAKSWLKSKGSPELVAE* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2784 705 Pfam Pentacotripeptide-repeat region of PRORP 374 550 IPR033443 -
Amo11g2784 705 Gene3D Tetratricopeptide repeat domain 117 265 IPR011990 GO:0005515
Amo11g2784 705 Gene3D Tetratricopeptide repeat domain 272 373 IPR011990 GO:0005515
Amo11g2784 705 ProSiteProfiles Smr domain profile. 607 690 IPR002625 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Amo11g2784 705 Pfam PPR repeat 247 277 IPR002885 -
Amo11g2784 705 Gene3D Tetratricopeptide repeat domain 374 542 IPR011990 GO:0005515
Amo11g2784 705 SMART SMR_2 604 694 IPR002625 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Amo11g2784 705 PANTHER OS03G0856100 PROTEIN 72 704 - -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Amo11g2784 705 SUPERFAMILY HCP-like 294 495 - -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Amo11g2784 705 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 72 704 - -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Amo11g2784 705 Pfam Pentatricopeptide repeat domain 311 368 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 430 462 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 466 497 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 395 427 IPR002885 -
Amo11g2784 705 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Amo11g2784 705 Pfam PPR repeat family 182 226 IPR002885 -
Amo11g2784 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2784 Amo-Chr11 137681385 137683723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2784 184 527 Glycosyltransferase AT1G05670 23.496 3.55e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2784 - - gmx:100795559 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2784 11 137681385 137683723 Amo14g0588 14 7884598 7886968 PCT