Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2759 ATGGCCACCTTAACCTTCCTCTTAGTTTCTTCAATCCTCTTAACCTTTGTTAATGCATATTCAACATACAACACAACCCAAATTTTCTCAAACCATATCCACAACCCTCCCAAGAATAAACCATTCCTCAACACCATAGACTCTTGCCGGCGAGCCCAAACAAACTGGGCCTCCAATCCGCACGCCTTGGCCGATTGCGCTATTGGTTTCGGCCAAGGCGCCATTGGAGGCAAACATGGAAACTTATACATTGTAACCGATCCTTCAGATGATGCTGTGAATCCAGCAAAAGGCACGCTTCGTTATGGTGCAATTCAAATGGAGCCACTATGGATAATGTTTGAGAAAGACATGGTTATTAGGCTTGAGAATGAGCTCATAGTGAATAGCTACAAGACCATTGATGGAAGAGGAGCCAAAGTTGAGATATCAAACGGGCCATGCATTACAATACAAGGTGTTAGCAACGTCATTATTCATGGCATTAGCATCCATGATTGTCAACCGGGTACGGTTGGCCTCGTCAGAAGTAGCCCTGACCATGTCGGCCACCGTCGAGGCTCCGACGGCGACGCCATCAGCATATTTTCATCATCCAATATTTGGGTTGATCATTGCTTCTTCGCACGTTCTGCTGATGGCCTAATTGATATTATTCATGCTTCAACTTCCATTACCATTTCTAACAATTATTTCACCCAGCATGACAAAGTTATGCTACTAGGACACAATGATGAATACACGGCAGATAAAATAATGAAGGTAACAATAGCCTTCAACCGGGTAAGATTTGGTTACGCCCATGTGGTCAACAACCAATATGATGAGTGGAAAATGTATGCTATAGGAGGGAGTTCTAATCCAACCATTTTAAGCGAAGGGAACGTTTATATAGCACCAAATAACGATAACGCGAAACAGATTACAAAGAGAGAAGCGAAGCAAAACTGGAAGAACTGGAAATGGAGGTCTTCCAAGGATTTATTCGTGAATGGTGCATATTTTGTACCATCTGGATATGGGAATTGTGCCCCAAATTATTCAAATACTCAATCTTTTAATGTTGTTCGAGCGTACATGGTGCCAACAATAACTCTCAATGCAGGTCCCTTAAGTTGTATTGTTGGCAGAGCATGTTAA 1140 0.4254 MATLTFLLVSSILLTFVNAYSTYNTTQIFSNHIHNPPKNKPFLNTIDSCRRAQTNWASNPHALADCAIGFGQGAIGGKHGNLYIVTDPSDDAVNPAKGTLRYGAIQMEPLWIMFEKDMVIRLENELIVNSYKTIDGRGAKVEISNGPCITIQGVSNVIIHGISIHDCQPGTVGLVRSSPDHVGHRRGSDGDAISIFSSSNIWVDHCFFARSADGLIDIIHASTSITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIAFNRVRFGYAHVVNNQYDEWKMYAIGGSSNPTILSEGNVYIAPNNDNAKQITKREAKQNWKNWKWRSSKDLFVNGAYFVPSGYGNCAPNYSNTQSFNVVRAYMVPTITLNAGPLSCIVGRAC* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2759 379 Pfam Pectate lyase 126 297 IPR002022 -
Amo11g2759 379 SMART amb_all 117 303 IPR002022 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Amo11g2759 379 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Amo11g2759 379 PANTHER PECTATE LYASE 10 378 - -
Amo11g2759 379 Gene3D - 43 372 IPR012334 -
Amo11g2759 379 SUPERFAMILY Pectin lyase-like 64 378 IPR011050 -
Amo11g2759 379 PANTHER PECTATE LYASE 18-RELATED 10 378 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2759 Amo-Chr11 137219319 137221269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2759 4 373 Polysaccharide Lyase AT4G22080 60.411 1.46e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2759 K01728 - gmx:100807483 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3678 01 109820083 109822003 Amo11g2759 11 137219319 137221269 hybridization