Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2745 ATGAGCATGATGAAGAGTTTGATGTTCCAACAACAACAAAATCAGCAGCAGCAACAAGTGGTGGTAGTGGAAGAAAACATGTCTAATTTGACTTCAGCTTCAAACGAAGGTAATAACAGTGTTTCCTCAGGTACAAGAACTGAAATTGGAACCTTCATGACTCCACCACCAACATCATCTGACACTTCTACACAACCACCATCAAAGAAAAAGAGAAATCTTCCCGGCAACCCAGACCCAGATGCTGAGGTAATAGCTTTATCTCCCAAATCTCTCTTAGCAACAAACAGATTCATGTGTGAGATCTGCAACAAAGGATTTCAGAGAGACCAGAACCTACAACTCCACAGAAGAGGCCACAACCTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGATAAGGAAGAAAGTGTACGTGTGTCCTGAACCCAGTTGCGTCCACCACAACCCGTCACGGGCTCTGGGGGACTTGACTGGGATCAAGAAACACTTCTGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGAAGTATGCAGTTCAATCTGATTGGAAAGCGCATTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCACTTGCACAAGAGACAGCAAGAACCACCACCACCACTTCAACAACAACAATACCCCAACTTCATCATCAATTCAATAATCCCCAAATTTTCCCATTGAAGAAAGAGCCATTACAGTTACACCACCAAAGTTTCAACCTTGTTAGGACAGAACTACCCCCATGGCTTGGAAGTAGCAGTAGTAGTAGTAATACTCCAACCCCATCACAAAATAATCATCAAGGTCAAGACTTTTTGAATCTCCATGAAAATAATGAGAACCCAAATCCAAATCCAAACCCTAACCCTAGGCTTGTAGGTGTTGGTGGTCCCACAATTGAAGGGTACCCTTCAGCTCACATGTCAGCAACAGCTTTGCTGCAAAAAGCAGCTCAGATGGGTGCAACCATGAGCAGCAGCATTGGGCCCCACCATCAAAGTCACGTGTCTGTTAATCCTTCTGCCACTCTTAATCACTTTCCTTTGAATTTGTCCTCACGTGATCACCACCACCATAACCATAACCATATCACCACAACCACCACCACTACCACTACCACCACAACTGCTGCTCCTTCTTCTTCTTCTTCTCTTCTTCATGATGTCATGATGATGAACTCTTTCTCTTCTGGATTTGAAGCGGCACAGTTTGATGATCCCTTTGGTGGAATTCTTGTTAGTAATAATAATATCACAAAGAAAGATGGTGATGATAATGGTAATGGTAATGATGGCAATAATAATAATAACTTCTTGTTGCATGATACTCTTCCAAAGACAACAACCACCACCGCCAATGACCGTGGTGGCCGTGGCGGCGGTGCAAAAGAAGAGCTGACGAGGGATTTCTTGGGTCTAAGGCCACTTTCCCATAGTGACATTCTCAGCATTGCTGCTATGGGAAACTGTATGAATGATCACCAAAACCAACCTCAAAAGCATTGGTAA 1596 0.4398 MSMMKSLMFQQQQNQQQQQVVVVEENMSNLTSASNEGNNSVSSGTRTEIGTFMTPPPTSSDTSTQPPSKKKRNLPGNPDPDAEVIALSPKSLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARTTTTTSTTTIPQLHHQFNNPQIFPLKKEPLQLHHQSFNLVRTELPPWLGSSSSSSNTPTPSQNNHQGQDFLNLHENNENPNPNPNPNPRLVGVGGPTIEGYPSAHMSATALLQKAAQMGATMSSSIGPHHQSHVSVNPSATLNHFPLNLSSRDHHHHNHNHITTTTTTTTTTTTAAPSSSSSLLHDVMMMNSFSSGFEAAQFDDPFGGILVSNNNITKKDGDDNGNGNDGNNNNNFLLHDTLPKTTTTTANDRGGRGGGAKEELTRDFLGLRPLSHSDILSIAAMGNCMNDHQNQPQKHW* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2745 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Amo11g2745 531 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 29 518 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 448 492 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 388 410 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 279 311 - -
Amo11g2745 531 Pfam Zinc-finger double-stranded RNA-binding 98 120 IPR022755 -
Amo11g2745 531 SUPERFAMILY beta-beta-alpha zinc fingers 97 194 IPR036236 -
Amo11g2745 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 518 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 27 83 - -
Amo11g2745 531 SMART c2h2final6 98 120 IPR013087 -
Amo11g2745 531 SMART c2h2final6 139 169 IPR013087 -
Amo11g2745 531 SMART c2h2final6 174 194 IPR013087 -
Amo11g2745 531 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Amo11g2745 531 Gene3D Classic Zinc Finger 95 195 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 448 484 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 279 329 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 27 71 - -
Amo11g2745 531 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2745 Amo-Chr11 137040595 137044119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2745 23 521 IDZ Gene Family AT1G55110 45.607 1.01e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g2745 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2745 K25870 - gmx:100808344 535.413