Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2739 ATGACGGCAAAGGCCAGTGAATACGAGGAGATTCGCCGGAAGAGGTTGGAGGAGAACAAGAAGAGGATGGAGGCCCTCAATCTCCCCAACCTCTCTCAGGCCCTCCACTCCTCTCCCCTTTCCAAATCCAAATCACACTCTCCCTCTCCGCTGAAGCGCGTCAAGTCACGCACCATTGAGAAGCAGGTGGTTGTGGTGAGGAGGTCCAGCCGCGTCGCCAACATGCCAGCTCCTGTTTACAAAGAAGTGGTAATTGATCGTGTAGTCACACCTAGAAGCCGCAGATATGGCGGCTCCTACGATCGCTACAGGGATTATTCAAAGCGGGTGTATGCTTCCGATGAAGCTAGACAGGAAGCCCTAGACAAGGCCGATAAGATACAATCCGATTTGCAGTCTAAGTCTCATCATCCATCCTTCGTTAAAACCATGCTCCAGTCTCACGTCACCGGCGGATTCTGGCTGGGTCTTTCAGTCCAGTTCTGTAAGACGCATCTTCCAAATCGTGACGAAAGAATTACTTTGATTGATGAGGATGGGGATGAGTATGAAACACTATATTTGGCTCGAAAAACAGGACTTAGTGCAGGTTGGAGAGGCTTTTCAATTGCTCATAACCTAGTTGATGGGGATGCTTTGGTTTTTGAACTAATTAGCCGCACTACATTCAAGGTTTACATTGTTAGAGTGAATAGTCCTGCAGAGGGTGAAGAGCAATGA 720 0.4875 MTAKASEYEEIRRKRLEENKKRMEALNLPNLSQALHSSPLSKSKSHSPSPLKRVKSRTIEKQVVVVRRSSRVANMPAPVYKEVVIDRVVTPRSRRYGGSYDRYRDYSKRVYASDEARQEALDKADKIQSDLQSKSHHPSFVKTMLQSHVTGGFWLGLSVQFCKTHLPNRDERITLIDEDGDEYETLYLARKTGLSAGWRGFSIAHNLVDGDALVFELISRTTFKVYIVRVNSPAEGEEQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2739 239 SMART B3_2 140 231 IPR003340 GO:0003677
Amo11g2739 239 SUPERFAMILY DNA-binding pseudobarrel domain 133 231 IPR015300 -
Amo11g2739 239 MobiDBLite consensus disorder prediction 30 47 - -
Amo11g2739 239 Pfam B3 DNA binding domain 140 229 IPR003340 GO:0003677
Amo11g2739 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 235 IPR044837 -
Amo11g2739 239 Coils Coil 6 26 - -
Amo11g2739 239 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Amo11g2739 239 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 3 235 - -
Amo11g2739 239 Gene3D - 112 232 IPR015300 -
Amo11g2739 239 MobiDBLite consensus disorder prediction 20 55 - -
Amo11g2739 239 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2739 Amo-Chr11 136941801 136943385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2739 8 237 B3 DNA Binding Superfamily AT3G19184 53.913 4.49e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo11g2739 B3 3.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2739 - - gmx:100794327 299.286