Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2690 ATGGGTCGTGGAAAGATTGAGATAAAGCTCATCCAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATCACAAAGAAGTTCATTGATCAGTATCGGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATACTAATAATAAGCTCAGAAGACAGATCAGGAYTCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTCTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCCACTGTCAACCCCCCAGCCGCCGCCACTCTTTTCATCCTCACCTTCTCTGTGCTCGTCGCGAAGCCCTATCAGCCGCCGCTACTCTTCTCCTCATCACCGTATATATGTGCTCGTCGTGA 492 0.4512 MGRGKIEIKLIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIITKKFIDQYRKTLGDIDLWHSHYEKMLENLKKLKDTNNKLRRQIRXRIGEGSLDMDDMSSQQLRTLEEDMVSAIAKIRHCQPPSRRHSFHPHLLCARREALSAAATLLLITVYMCSS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2690 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 48 IPR002100 GO:0003677|GO:0046983
Amo11g2690 163 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Amo11g2690 163 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Amo11g2690 163 Pfam K-box region 66 125 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g2690 163 Coils Coil 93 96 - -
Amo11g2690 163 PANTHER APETALA3 1 127 - -
Amo11g2690 163 Coils Coil 69 91 - -
Amo11g2690 163 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Amo11g2690 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo11g2690 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo11g2690 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo11g2690 163 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 127 - -
Amo11g2690 163 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2690 Amo-Chr11 135345392 135346179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2690 1 124 MADS-box Gene Family AT3G54340 48.571 2.42e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo11g2690 K-box 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2690 K09264 - gmx:100784496 205.682