Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2685 ATGATGTCGAGCTGCAGCATGGATGCTGGACCTGAGCAACTGTGCTACATACCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAWCAGCTTGTTCGACATGGTAACGGTTCGATGCGGTCACTGCACCAATCTCTGGTCCGTAAACATGGCTGCGGCCTTTCAATCACTCTCATGGCAAGATCTTCAGGGCCCTGGGCAGTGCAATCAGGAGTATAGGATTGACACAAATATTAATATGAATAATGGTGGCTCCTCTTCCAAATGCAACAATAGTAGTAGGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCAGGAAAGGGCTGTCAACCGCCCACCCGAGAAGAGGCAGCGCGTACCTTTTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTTCAGCAAAAAACTGGGCACATTTTCCTCATATTCATTTTGGGCTAATGTTGGAGAGCAACAATCAAGCTAATAAGATGGATAATGCCTCTGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTGTTGAATAAATGA 603 0.4544 MMSSCSMDAGPEQLCYIPCNFCNIVLAVSVPCXSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQGPGQCNQEYRIDTNINMNNGGSSSKCNNSSRLASMRAPTNHVTQERAVNRPPEKRQRVPFAYNQFIKEEIQRIKANNPDISHREAFSTSAKNWAHFPHIHFGLMLESNNQANKMDNASEKHLMSRAAPALLNK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2685 200 SUPERFAMILY HMG-box 115 163 IPR036910 -
Amo11g2685 200 Pfam YABBY protein 11 170 IPR006780 GO:0007275
Amo11g2685 200 Gene3D High mobility group box domain 109 193 IPR036910 -
Amo11g2685 200 PANTHER AXIAL REGULATOR YABBY 5 2 188 - -
Amo11g2685 200 PANTHER PROTEIN YABBY 6-RELATED 2 188 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2685 Amo-Chr11 135234387 135237476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2685 12 178 C2C2-YABBY Transcription Factor Family AT2G26580 71.257 1.07e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo11g2685 YABBY 1.1e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2685 K25796 - gmx:100499942 334.339