Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2673 ATGGAACGGAATTGTTCCCTCCGGCGAAAGACACAGAAAGAGAAGGAGGTGGTGGTCAAGAAGGTAATTTGGGCAGCTATCGAGGGGCATTCTTGTCCAATATGTTTTACCGATCTGGAATCTCGGTTCAGAGAAGCTGCGGTTCTGTCCCGCTGCTACCACGCTTACTGCACCCACTGCATCCGCCGTTGGAGTCACGTGCGCAGAGCGTGCCCTCTCTGCAATTCCGGTTTCGCCTTCTGGTTCTCCATCCTCAGCCTCTCTTCCAGAACCTTCCGGAAGCACTTCTTACCCTTCCACTCTCATTCTGATGCAAACCAACCGCCACGACTTCCCTCTACCAGGGCGAGGGTAGCGGTGACTAATGGACGAAGGAGGGCATTGCCCCGGAGAAGATCGTTTGGGCGTGCTGGACTTGTGAGTGCAGATGTTATTGCTCAGAGGAAGCTTCAATGGCGTGCTAGGTATGTAAACAACAATTCAATTCAGTGTATTGGAAGATTAGTTTATATGATTTGGGAATTCGGGTTTTGTAGCATATACGATCAAAGATTGCAACCTGATTGTGCAACCCTAAGGTGTCTTGAGCGAGGATGCAAAGGCTGCGGTCCATGCAACTTGTTCCTTTCCATGGGGAATGGAAGAAGAAATGCTGTTAAAAGGGACATTCTACAACGGATTGAGCCATGGATAATGAGGGAGCTACAAGCTCTCTTAGGGGACCCAGATCCAACTGTCATTGTTCATGTGGCCACCTCACAGTTCATCACTTGGCTAGAAGAGAAGGCGAAATCGCCATCTCGCCACCTTCATGTGGGAGATACCTTCATTTCACCTCTTCGTCCCTTCCTACATGATAAAGCGACCATCTTTTGGCATGAGCTAAGTTGTTTCGCTGAGGGTTGTCACAACATGGATACCTACGATGAAGTTGTCGAATATAAACAACAGGAGTGGGTGGACAACACACATTAG 975 0.4903 MERNCSLRRKTQKEKEVVVKKVIWAAIEGHSCPICFTDLESRFREAAVLSRCYHAYCTHCIRRWSHVRRACPLCNSGFAFWFSILSLSSRTFRKHFLPFHSHSDANQPPRLPSTRARVAVTNGRRRALPRRRSFGRAGLVSADVIAQRKLQWRARYVNNNSIQCIGRLVYMIWEFGFCSIYDQRLQPDCATLRCLERGCKGCGPCNLFLSMGNGRRNAVKRDILQRIEPWIMRELQALLGDPDPTVIVHVATSQFITWLEEKAKSPSRHLHVGDTFISPLRPFLHDKATIFWHELSCFAEGCHNMDTYDEVVEYKQQEWVDNTH* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2673 324 SMART ring_2 32 74 IPR001841 -
Amo11g2673 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 26 322 - -
Amo11g2673 324 Pfam Ring finger domain 31 75 IPR001841 -
Amo11g2673 324 ProSiteProfiles Zinc finger RING-type profile. 32 75 IPR001841 -
Amo11g2673 324 PANTHER TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED 26 322 - -
Amo11g2673 324 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Amo11g2673 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 80 IPR013083 -
Amo11g2673 324 SUPERFAMILY RING/U-box 18 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2673 Amo-Chr11 134946013 134947708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2673 21 296 C3H Transcription Factor Family AT2G39100 39.510 1.58e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2673 - - adu:107464375 583.948