Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2666 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGGCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTTCTTCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTRCMCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCWGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACTCCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCTGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGGAATGTGGCCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGSTCTCTCAGTTAYAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCGTATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAWCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGYGCYRCATCTCACACCTCAAGCTAA 1461 0.5161 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGGTESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGSSCKYNHPRQAAGTPXLVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQXSAQSSSSSATASSAATSSAXSHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2666 486 MobiDBLite consensus disorder prediction 383 486 - -
Amo11g2666 486 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Amo11g2666 486 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Amo11g2666 486 MobiDBLite consensus disorder prediction 245 310 - -
Amo11g2666 486 Gene3D - 41 84 - -
Amo11g2666 486 MobiDBLite consensus disorder prediction 404 486 - -
Amo11g2666 486 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Amo11g2666 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Amo11g2666 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Amo11g2666 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Amo11g2666 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Amo11g2666 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Amo11g2666 486 MobiDBLite consensus disorder prediction 245 302 - -
Amo11g2666 486 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Amo11g2666 486 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Amo11g2666 486 MobiDBLite consensus disorder prediction 1 41 - -
Amo11g2666 486 Gene3D - 303 388 - -
Amo11g2666 486 Gene3D - 89 172 - -
Amo11g2666 486 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Amo11g2666 486 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Amo11g2666 486 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Amo11g2666 486 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Amo11g2666 486 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Amo11g2666 486 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Amo11g2666 486 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Amo11g2666 486 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Amo11g2666 486 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Amo11g2666 486 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Amo11g2666 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 471 - -
Amo11g2666 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2666 Amo-Chr11 134852289 134856702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2666 1 453 C2H2 Transcription Factor Family AT5G18550 55.388 4.62e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo11g2666 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2666 - - gmx:100789405 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2666 11 134852289 134856702 Amo11g2666 11 134852289 134856702 ECH
Amo01g3501 01 107656105 107660578 Amo11g2666 11 134852289 134856702 hybridization
Amo11g2666 11 134852289 134856702 Amo20g0076 20 997798 1004369 PCT
Amo20g0076 20 997798 1004369 Amo11g2666 11 134852289 134856702 PCT