Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2656 ATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCTCTTCTCTTCTTCCTCAGCCACAACCCCCCTCTTCCATCTCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCAGAAGCACGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTATCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCCCCCTCCCAAATAGCCACCATCATGTGCAAGATTCCCGTGGTACTCACATATGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCYTGCTTCGAAGCCTTAACYATATAGTATCCTTWTACGAATTGGTAAGGAGGTTCTWTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGCCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTWACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGCTTCGCATTAGACCGGTTCTTTTTGGTTACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGAAGCTGTTCCTAAAGAAGTGTGTCACATGTTTTGAGGAGAAAGATAGACTTAAGTCAACTCTGCTTAATGTCAAGGTGAGTGTTGTGAGTGTGTGCCCTGTGACTCCGACAGGGCCCCTCAATTGCCCTCAGCATTTGTTCTTTGCAGGTTTTGTTTCAGATTCGCAGCTTGCCATCTTCATCTTCATGTGGACGAGTGAGCGGAGGATCATCCACCTGGAGCAGGGATGGGATTTCATTCAGCAGGGCATCACCAAGCTCAAGATAATTCTAGAAGAAGGCTTGCCTGAACCTTACTTCAGCTCCGATGACTACCTGATGCTTTACACGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACGGTACTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGATAGAACTTGTAAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCATTTTTTGGATCGCCACTTTATTGCCTGGAGGTCACTCCCACGCCTTAGTGAAGTTGGCTTAACTTGCTTCTGTGATTTGGTTTACAAGGAGCTAAATGKGAAAGTTAGAGATGCAGTTATTTTTCTTATTGATCAAGAACGTGAAGGAATGCATATTGATCGGGCTTTATTAAAGAATGTATTAGATATATTTGTTGGAATTGGGATGGGGCGAATGGATCACTATGAGAATGATTTTGAAACTGCAATGCTTAAAGACAGTTCTGCTTATTACTCTCAGAAGGCTTCTAATTGGATCCTAGAAGATTCTTGTTCTGATTACATGCTCAAGGCTGAGGAGTGCTTAAAATGGGAGAAAGATAGGGTTGCTCATTATTTGCACTCCAGTGGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGCTATTCGTGTATGCAAACCAACTCCTCCAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGACAAGGTTGAAGATCTGTCACGGATGTTCAGGCTATCTTCTAAGATACCGAAGCATGTTATCAGTGAAGGTATGGTATTGGTTAAGCAGGCTGAAGATGCAGCTAGTACCAAAAGGGTCTGTTACTGA 2193 0.4414 MFHSKHHSLTRALLFFLSHNPPLPSPSTKSYLLLLRPEARRHSTTSTSDDHHSFTISYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSPSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNXIVSXYELVRRFXPSDLKAIAYLTGCPSSIADVRVPQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSALRIRPVLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEKLFLKKCVTCFEEKDRLKSTLLNVKVSVVSVCPVTPTGPLNCPQHLFFAGFVSDSQLAIFIFMWTSERRIIHLEQGWDFIQQGITKLKIILEEGLPEPYFSSDDYLMLYTPPHDYSQQLYDKYKEVFEEYIQSTVLPSLREKHDEFMLIELVKRWANHKIMVRWLSRFFHFLDRHFIAWRSLPRLSEVGLTCFCDLVYKELNXKVRDAVIFLIDQEREGMHIDRALLKNVLDIFVGIGMGRMDHYENDFETAMLKDSSAYYSQKASNWILEDSCSDYMLKAEECLKWEKDRVAHYLHSSGEPKLLEKVQHELLFVYANQLLQKEHSGCHALLRDDKVEDLSRMFRLSSKIPKHVISEGMVLVKQAEDAASTKRVCY* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2656 730 SUPERFAMILY Cullin repeat-like 426 722 IPR016159 -
Amo11g2656 730 Gene3D - 674 720 - -
Amo11g2656 730 Pfam mTERF 189 357 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 Pfam mTERF 89 235 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 Gene3D Transcription termination factor 3, mitochondrial 66 183 IPR038538 -
Amo11g2656 730 Gene3D Transcription termination factor 3, mitochondrial 184 368 IPR038538 -
Amo11g2656 730 PANTHER CULLIN 3B 419 728 - -
Amo11g2656 730 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Amo11g2656 730 Pfam Cullin family 466 706 IPR001373 GO:0006511|GO:0031625
Amo11g2656 730 Gene3D Cullin Repeats 550 672 - -
Amo11g2656 730 Gene3D Cullin Repeats 422 549 - -
Amo11g2656 730 PANTHER CULLIN 419 728 IPR045093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2656 Amo-Chr11 134715027 134721649 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo11g2656 Cullin 4.6e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2656 K03347 - gmx:100793682 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2656 11 134715027 134721649 Amo11g2656 11 134715027 134721649 ECH
Amo01g3492 01 107540679 107546070 Amo11g2656 11 134715027 134721649 hybridization
Amo11g2656 11 134715027 134721649 Amo04g0390 04 7669553 7674462 PCT
Amo04g0390 04 7669553 7674462 Amo11g2656 11 134715027 134721649 PCT