Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2615 ATGGCGGGTGATCATTTCAACACCATGGACGATAAGAAGAGGAAGAAGAGGATCGCCTTGATTAGCGTCTCTTCCATTCTCCTCGTGGCCATGGTTGCTTGCGTTGCAGTGGGAATTGACAAGAGCGCTATGGAAGAAGAAGAAACCAGCAGCACCAACACAAACACAATTGTAAAGAACCAGAAGAACGTGCATGTGATTTGCGAATCAGCGGAGTTCAAAGACAGGTGCGAGAAGAGCCTCGAGAAGGCCACCGCCAACGGCACCACCGACACGAAACAACTCATCATTGCTGCCTTCAACGCCACCGCGGAGGAAATTGAGAATCAGATCAACGACTCAAGCCTCGTCCAAAAGTTGGTGAGCGACGACAGGAGCAAACAGGCGTTGGATATTTGCAAGGAGGTTCTTGGTTACGCCATTGACGATATCCACAGATCTGTTCACATGATGGAGAAGTTCGAGCTGAGAAGGATCGGTCAGTACGCTTATGACCTCAAGATTTGGATCGCCGGTACACTCGCTCACCAGCAAACTTGCTTGGAAGCCTTCGAGAACGTTCCGACCGAAGCTGGCAAGGAGATGGCTAAGGTTTTGAACACCTCTCTCCAGCTAAGCAGCAACGCCTTGGATATCATCAATGGCGCCAGCAAGATCTACAAGAGCTTCAACTTGGATGCCTTCTTCGGGGATAGTGCCGCCGCCCCATCCCCAGTCCCCGCGGGCAGGAGGCTTCTGTCTGACGTGGATGAGGGTTTGCCTTCGTGGATCGAGCAAGGCCGAAGGAGTCTWCTSGAAGACCCCACTCRTCTGAAACCCGATTGTGTTGTGGCTCAGGACGGCAGCGGAAACTTCAAGACTCTCACGGAGGCCCTCCAGACTGTTCCTAAGAACAACAGGAAGCGTTTCGTCATCTACGTCAAGGCAGGCATCTATAAGGAGTATGTTAACTTGCAGAAGTCCATGTCCCACGTCACCATTATCGGAGATGGCCCCACAAAGACCAGATTCTCCGGCAGCAAGAATTATGTTGATGGTCTCCAGACTTACTACACCTCAACTTTCAGTGTAAATGCCGCTAACTTCATGGCGGTAAATGTTGGGTTTGAGAACACAGCAGGAGCGGAGAAGCACCAAGCGGTGGCACTCCGCGTGACAGCAGATCAAGCAGTGTTCTACAACTGCCACATGGATGGATACCAAGACACGCTATACGTGCAATCACAGAGGCAGTACTACCGCGACTGCACGGTGACGGGCACCATTGACTTCGTGTTTGGTGACGCAGCGGGAGTGTTCCAAAACTGCACCTTCATTGTGAGGAAGCCCCTGGAAACCCAACAATGCATGGTCACTGCTGGTGGAAGGACCAAGATTGATAGCCCAACCGCCCTGGTGTTCCAGGACTGCCACTTCACGGGCACACCAGAGTTGAAGAGCTTGCCCCGCAAGGTGTCGTACCTTGGAAGGCCATGGAGACTGTTCTCCAAGGTTGTGATAATGGACTCTGATATTGATGATATCTTCAGTCCAGAAGGGTACATGCCGTGGATGGGAACGGCATTCAGGGACACATGCACGTATCTTGAATACAACAACAGGGGACCTGGTGCTGTTACAAAAGGTAGAGTCACATGGCCTGGTGTTAGGGTCGTCACCTCTCTCGAGGCTGATCTATACTACCCTGGAAGGTTCTATGAGATCTCTAACCATACTGAGCGTGATGCTTGGATCGTTGATTCTGGAGTCCCTTACAATCTCGGCCCAAACAGCCCCTTCAAGCTCCCATCCTTATCATTCTCACTCCCATCCATAACTTTCCCTAAGTTGGTTTAA 1836 0.5131 MAGDHFNTMDDKKRKKRIALISVSSILLVAMVACVAVGIDKSAMEEEETSSTNTNTIVKNQKNVHVICESAEFKDRCEKSLEKATANGTTDTKQLIIAAFNATAEEIENQINDSSLVQKLVSDDRSKQALDICKEVLGYAIDDIHRSVHMMEKFELRRIGQYAYDLKIWIAGTLAHQQTCLEAFENVPTEAGKEMAKVLNTSLQLSSNALDIINGASKIYKSFNLDAFFGDSAAAPSPVPAGRRLLSDVDEGLPSWIEQGRRSLLEDPTXLKPDCVVAQDGSGNFKTLTEALQTVPKNNRKRFVIYVKAGIYKEYVNLQKSMSHVTIIGDGPTKTRFSGSKNYVDGLQTYYTSTFSVNAANFMAVNVGFENTAGAEKHQAVALRVTADQAVFYNCHMDGYQDTLYVQSQRQYYRDCTVTGTIDFVFGDAAGVFQNCTFIVRKPLETQQCMVTAGGRTKIDSPTALVFQDCHFTGTPELKSLPRKVSYLGRPWRLFSKVVIMDSDIDDIFSPEGYMPWMGTAFRDTCTYLEYNNRGPGAVTKGRVTWPGVRVVTSLEADLYYPGRFYEISNHTERDAWIVDSGVPYNLGPNSPFKLPSLSFSLPSITFPKLV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2615 611 PANTHER PECTINESTERASE 10 592 - -
Amo11g2615 611 Pfam Pectinesterase 274 565 IPR000070 GO:0030599|GO:0042545
Amo11g2615 611 Gene3D - 271 589 IPR012334 -
Amo11g2615 611 SUPERFAMILY Pectin lyase-like 271 558 IPR011050 -
Amo11g2615 611 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 215 IPR006501 GO:0004857
Amo11g2615 611 ProSitePatterns Pectinesterase signature 1. 299 318 IPR018040 -
Amo11g2615 611 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Amo11g2615 611 CDD PMEI-like_3 67 218 - -
Amo11g2615 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 216 IPR035513 -
Amo11g2615 611 SMART PMEI_2 59 212 IPR006501 GO:0004857
Amo11g2615 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 214 IPR035513 -
Amo11g2615 611 Pfam Plant invertase/pectin methylesterase inhibitor 64 212 IPR006501 GO:0004857
Amo11g2615 611 PANTHER PECTINESTERASE 10 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2615 Amo-Chr11 133951913 133954193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2615 10 606 Carbohydrate Esterase AT3G05610 41.749 8.27e-174 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2615 K01051 - gmx:100800194 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2674 01 97552231 97554618 Amo11g2615 11 133951913 133954193 hybridization