Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2599 ATGGAGAACACACAACTTCAAGGAGAGGTTCCTGATTCTTTGTTTAGTTTAGCCAGTTTGCAGACTGTGGTGTTAAAAGACAACAAAATAAATGGAACCTTGAATGTCGGCTCCACCTACAGCAAGCATCTGCAACTTATTGATCTTCAAAATAATGCAATTGACAATTTTGAGCAAAAACATGACCATTTAAGTGTCAGGATAATGCTTAAGGGTAACCCAATTTGCTATGAAACTGTAGAGGGAATAGCTACTCCCTACTGCTCCGATAATCAGGCTAATCAACTGTCATATAGAACTCCATGGAATAACTGTCAGCCTAGTACCTGCAGTTTGGAACAGGTTGCTAGCCCCAACTGTGCATGTGCTTATCCATATACAGGAACTTTAACTTTCAGAGCACCTTCCTTTTCAGACCTTGGAAACAAGTCTTACTTCCAACAGCTTGAGAAGGGTCTAATGCAATCTTTTGAGTCTCATCATCTACCTGTTGATTCTGTTTTGTTGAGTCATCCAACTGAGGATCCAGATCACTATCTTGAATTGAGTTTACAAGTCTTCCCAGCAGGGCAGGATCGTTTCAATCGAACAGGGGTTTATACCATTGGTTTTCTGCTAAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCGTTTTACTTTGATGCAGATAAATATGAACACTTTGGGAACTCAGGTACTATGGAGTCGAGCAAATCAGTTAACATTGGAATCATAGCTGGAGCAGCAGTTGGTGGTTGTGTGCTGGTACTGTTATTAGTGGTAGCAGGTGTTTATGCTTTCTGCCAAAAGAAAAGAGCCGAAAGGGCAATTGGACAAAGCAATCCTTTTAGACGATGGGATACAGCTGAGAGTAAGGGTGACATGCCTCAGTTGAAAGAAGCACGTCGGTTTTCTTTCGAAGAGCTTAAAAGATACACCAGAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTATGGGAAGGTTTACAAGGGAACCCTCCCCAATGGACAATTGCTAGCAATAAAAAGAGCTCAAAGAGAGTCTAAGCAGGGAAGGCTTGAGTTCAAAGCTGAGATTGAGCTCCTATCAAGGGTCCACCACAAGAATCTTGTTACCCTTATAGGATTCTGCTTTGAGCATGAAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACATTAAAGGACACTCTCACAGGGAAATCAGGGATTAGATTGGATTGGGTTAGAAGGCTAAAAGTTGCACTTGGAGCTGCACAGGGTTTGACTTATCTTCATGAACTTGCTGATCCTCCCATCATACATAGGGATATCAAATCAAACAATGTTTTGCTAGATGAGTGCCTAAACGCCAAAGTTGGTGATTTTGGTCTCTCCAAGTCTATTGTTGATCCCGAAAAAGATCACGTTACCACTCAAGTTAAAGGAACAATGGGTTACATGGATCCAGAGTACTATATGAGTCAACAACTGACAGAGAAGAGTGATGTATATAGCTTTGGAGTGCTGATGTTGGAGATTATATCTGCAAGAAGACCAATAGAAAGAGGGAAGTACATTGTGAAAGAGGTTAGAAATGCAATGGACATGACAAAAGTGCTTTGTGGTCTGCATGAAATTATTGACCCCAGCATTGGTCTAGGGGCCTCTAGCAGCATTGGGCTTGTTGGTCTGGACAAGTTTGTGGATTTGGCTATGAAATGTGTTTCAGATTCAGGTGTTGAGAGGCCAAAGATGAGTGAGGTTGTGAGAGAACTAGAGAATATATTGCATCATTCATTAGCAGCTGGTGGTTCAAATGATGAATCAGGTTCCATGATTTCTTCGAGTTGTGAAGAAGTTAGCAGAGGTAGTTCTAGTTGCCATCCTTACAGCAGTGAGTCCTTTGATTTGAAAGCTGCACTTTCATATCCAAAAGTGGAACCCAAGTAA 1947 0.4129 MENTQLQGEVPDSLFSLASLQTVVLKDNKINGTLNVGSTYSKHLQLIDLQNNAIDNFEQKHDHLSVRIMLKGNPICYETVEGIATPYCSDNQANQLSYRTPWNNCQPSTCSLEQVASPNCACAYPYTGTLTFRAPSFSDLGNKSYFQQLEKGLMQSFESHHLPVDSVLLSHPTEDPDHYLELSLQVFPAGQDRFNRTGVYTIGFLLSNQTFKPPKVFGPFYFDADKYEHFGNSGTMESSKSVNIGIIAGAAVGGCVLVLLLVVAGVYAFCQKKRAERAIGQSNPFRRWDTAESKGDMPQLKEARRFSFEELKRYTRNFSQANDIGSGGYGKVYKGTLPNGQLLAIKRAQRESKQGRLEFKAEIELLSRVHHKNLVTLIGFCFEHEEQMLVYEYVPNGTLKDTLTGKSGIRLDWVRRLKVALGAAQGLTYLHELADPPIIHRDIKSNNVLLDECLNAKVGDFGLSKSIVDPEKDHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLMLEIISARRPIERGKYIVKEVRNAMDMTKVLCGLHEIIDPSIGLGASSSIGLVGLDKFVDLAMKCVSDSGVERPKMSEVVRELENILHHSLAAGGSNDESGSMISSSCEEVSRGSSSCHPYSSESFDLKAALSYPKVEPK* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2599 648 Gene3D Ribonuclease Inhibitor 1 117 IPR032675 -
Amo11g2599 648 Pfam Protein tyrosine and serine/threonine kinase 321 526 IPR001245 GO:0004672|GO:0006468
Amo11g2599 648 Gene3D Phosphorylase Kinase; domain 1 288 393 - -
Amo11g2599 648 MobiDBLite consensus disorder prediction 600 631 - -
Amo11g2599 648 SUPERFAMILY Protein kinase-like (PK-like) 304 598 IPR011009 -
Amo11g2599 648 ProSiteProfiles Protein kinase domain profile. 318 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2599 648 MobiDBLite consensus disorder prediction 603 631 - -
Amo11g2599 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 634 - -
Amo11g2599 648 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Amo11g2599 648 SMART serkin_6 318 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2599 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Amo11g2599 648 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Amo11g2599 648 Gene3D Transferase(Phosphotransferase) domain 1 394 614 - -
Amo11g2599 648 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 634 - -
Amo11g2599 648 CDD STKc_IRAK 324 594 - -
Amo11g2599 648 SUPERFAMILY Outer arm dynein light chain 1 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2599 Amo-Chr11 133615163 133617645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2599 1 648 Receptor kinase-like Gene Family AT5G49760 55.624 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Amo11g2599 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2599 - - gmx:100811702 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2599 11 133615163 133617645 Amo14g0977 14 14217716 14224551 PCT