Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2596 ATGGAAGGGATACCGCACCCACTACCCAGAACTGTTGAGGAGGTTTTCAGCGACTTTAAGGGCAGGCGAGCTGGATTGATCAAAGCCCTAACCACTGATGTTGATAAGTTCTACCAGCAGTGCGATCCTGACAAGGAGAATTTGTGTCTATATGGATTTCCGAATGAAACATGGGAAGTGAATTTGCCTGTGGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATCAACTTTGCCAGAGATGGCATGCAAGAGAAGGACTGGTTATCACTAGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGCTTTGGATTTGGCAAGAATGAAAGGAAAAGGCTTTTCCAGATGATCAATGATCTGCCAACTATCTTTGAAATTGTTACAGGAAGTGCCAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAACAAAAGCAAATCAAGTGGAAAGATGTCCCGTCAATCTGAGAATCAGGCCAAAGGAGTGAAGATGTCTGCACCGCCGAAAGAAGAGGATGATAGTGGAGAAGAGGAAGAAGATGACGATGAACAAGGTGCGACATGTGGTGCCTGTGGCGATAATTATGGAAATGATGAATTCTGGATTTGTTGTGATATGTGCGAGAGATGGTTCCATGGCAAATGTGTTAAAATTACTCCCGCCAAGGCTGAGCACATCAAGCAATACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 762 0.4514 MEGIPHPLPRTVEEVFSDFKGRRAGLIKALTTDVDKFYQQCDPDKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEIVTGSAKQSKDQPAAHNNGNKSKSSGKMSRQSENQAKGVKMSAPPKEEDDSGEEEEDDDEQGATCGACGDNYGNDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2596 253 MobiDBLite consensus disorder prediction 141 197 - -
Amo11g2596 253 SMART PHD_3 199 247 IPR001965 -
Amo11g2596 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Amo11g2596 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Amo11g2596 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Amo11g2596 253 MobiDBLite consensus disorder prediction 141 173 - -
Amo11g2596 253 MobiDBLite consensus disorder prediction 183 197 - -
Amo11g2596 253 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Amo11g2596 253 CDD PHD_AL_plant 200 249 IPR044104 -
Amo11g2596 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Amo11g2596 253 Pfam PHD-finger 200 249 IPR019787 -
Amo11g2596 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 250 - -
Amo11g2596 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2596 Amo-Chr11 133576924 133581637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2596 1 250 Alfin-like Transcription Factor Family AT1G14510 81.600 1.61e-133 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo11g2596 Alfin 1.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2596 - - gmx:100807826 464.922