Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2582 ATGGAACTTTCGAGTCAAGAAGGAGATATACCAATCGCAGTAAACACCACCGCCAATTATGGTGGCAATGGCCATGGCGCCCACATCAACATTCACCACACCCAAAACCCTTCCAATGGCTCCTCTATGCACCCGCTCGACAATGGACCCTACAATAGCAAGCAGGAGGAGGAAGAGGAGGAGGAGGTGGTGGTGCCGCTCGTCAGGTACAGAGAGTGCCTCAAGAACCATGCCGCCGCCATGGGAGGAAATGCCACCGACGGTTGTGGCGAGTTCATGCCAAGCGGAGACCACGGMACCATGGAAGCCCTCACCTGCTCCGCCTGCCGCTGCCACAGAAACTTCCACCGAAAGGAAATCCAAGGSGAGCCYTCAGCCCCACCCCCGCCCTTGCTGGAGTACCACCACCACCACTTCAACACCGCCACCAGGCACCTCGCCGCTTCTAGAAAGTTCCTTCACAAGAACATGCACCATCATCATCATCTCGGTTACCCTACTGCYGGCGGCGGTAACATCCTTCCGTCGAGAACGGTGCCCCCGGCGCAGATGATAATGCCCTACAACATAGGCCCCATGCCGTCGTCGGAGCACTCGGACGAGCAGGACGAGCGGGTGAAGAAGAAGCGGTTCAGGACAAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCTGGCTTTTGCGGAGAAGGTTGTCTAG 696 0.5704 MELSSQEGDIPIAVNTTANYGGNGHGAHINIHHTQNPSNGSSMHPLDNGPYNSKQEEEEEEEVVVPLVRYRECLKNHAAAMGGNATDGCGEFMPSGDHGTMEALTCSACRCHRNFHRKEIQGEPSAPPPPLLEYHHHHFNTATRHLAASRKFLHKNMHHHHHLGYPTAGGGNILPSRTVPPAQMIMPYNIGPMPSSEHSDEQDERVKKKRFRTKFSQEQKEKMLAFAEKVV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2582 231 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Amo11g2582 231 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 70 119 IPR006456 -
Amo11g2582 231 Pfam ZF-HD protein dimerisation region 68 120 IPR006456 -
Amo11g2582 231 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 6 230 - -
Amo11g2582 231 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 230 - -
Amo11g2582 231 MobiDBLite consensus disorder prediction 197 214 - -
Amo11g2582 231 Gene3D - 194 231 - -
Amo11g2582 231 MobiDBLite consensus disorder prediction 189 214 - -
Amo11g2582 231 MobiDBLite consensus disorder prediction 24 60 - -
Amo11g2582 231 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2582 Amo-Chr11 133411314 133413388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2582 1 230 ZF-HD Transcription Factor Family AT1G14440 40.741 1.18e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo11g2582 ZF-HD_dimer 4.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2582 - - adu:107465625 328.176