Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2570 ATGGCTTGTTTGAAACCTGATGAGTTGGAGCTTGTTGGTAGAGGAGAGCAAGGTTCTCATCATGCTATGGAAAGAATTGGTGATGCTAATGTTGGTTCCAACAACAACAACATGGCTGATGATGCTTCTATGATGCATTTTCCTGCTAACTGGCCAATGCCAGCATCTGGACTGAATGCATCAGCTCCAACTCATTTTACCATCTTATTCAATGGGAACACTTTTGTCTATGATGGAATTAATACAGAGAAGGTGCAAGAGATAATGCTTATTGCTGCTGCATATGCCAAGTCTGCTGAAGTGAAAATTGGGACACAATCTTCATTCACTCCACTCATTCCCACTTCCACAAGTTCTTCTCCTGCACAAAGAAATTCCAACAACTTGCCTTCAAAACAATCTGTGTGCTTTCCTGCAGAAAAGAGTTCCATTTGCAGGCTGCAAGAATTTCCGTTAGCACGTAGACAATCTCTTCAGAGGTTTCTTGAGAAGCGACGAGTCAGGTTGTTTAGCAAAGCCCCTTATGGTTTCTCAAAAAACATGGCTGGCCTCTATGATGACAATAGTCCAGGGAACATAGAGAACAGCTTTTATGATGACAATAGTCCACAAGATTTTGCTTCTTAA 627 0.4163 MACLKPDELELVGRGEQGSHHAMERIGDANVGSNNNNMADDASMMHFPANWPMPASGLNASAPTHFTILFNGNTFVYDGINTEKVQEIMLIAAAYAKSAEVKIGTQSSFTPLIPTSTSSSPAQRNSNNLPSKQSVCFPAEKSSICRLQEFPLARRQSLQRFLEKRRVRLFSKAPYGFSKNMAGLYDDNSPGNIENSFYDDNSPQDFAS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2570 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 18 183 - -
Amo11g2570 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 183 IPR040390 -
Amo11g2570 208 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Amo11g2570 208 SMART tify_2 59 94 IPR010399 -
Amo11g2570 208 MobiDBLite consensus disorder prediction 112 131 - -
Amo11g2570 208 Pfam tify domain 61 93 IPR010399 -
Amo11g2570 208 Pfam Jas motif 151 175 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2570 Amo-Chr11 133169966 133173573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2570 63 175 Tify Gene Family AT5G20900 43.860 2.02e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo11g2570 tify 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2570 K13464 - gmx:100306655 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2570 11 133169966 133173573 Amo03g1670 03 46638601 46643409 PCT
Amo03g1670 03 46638601 46643409 Amo11g2570 11 133169966 133173573 PCT