Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2562 ATGGAAGAAATGGTGATGGGAACATTGGACCTAATAACTGCATCTCCTCATTCATCTTCATCATCTTCATCTTCTCCCACCACTGATAATAACAATAACAACAACCACCCTTCTTCTTCTTCAAGTATCTCAACAAGAAGAACCGATTTGAGCACCGACCTCAGACTTGGCCTTAGCCTCTCTCCTTCTCATTATTCAACACCATCAAGGGAGCAAAGAAGTAGTTTTGATTGGCCACCAGTGAAGTCAACATTGAGGTGCACCCTTGTTGAGAAAAGTCAAATATCTCACTTTGTTAAAGTATACATGGAAGGCATCCCCATCGGTAGGAAGCTCAATCTGCTGGCACACCATAATTATCATGCTCTTGTTAAGGCTCTTGCCAACATGTTCAGAACTACCATACTCTGCCCTAACTCTCATCAATTACCACTCATCTCTGGGAATAATGTTCATGTTCTTACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGACAAGTGTGAAGAAGTTGAAGATCACAAGAGCTGACAGATGTTAA 570 0.4175 MEEMVMGTLDLITASPHSSSSSSSSPTTDNNNNNNHPSSSSSISTRRTDLSTDLRLGLSLSPSHYSTPSREQRSSFDWPPVKSTLRCTLVEKSQISHFVKVYMEGIPIGRKLNLLAHHNYHALVKALANMFRTTILCPNSHQLPLISGNNVHVLTYEDQEGDWMMVGDVPWEMFLTSVKKLKITRADRC* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2562 189 Gene3D - 91 189 - -
Amo11g2562 189 MobiDBLite consensus disorder prediction 1 47 - -
Amo11g2562 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 23 189 - -
Amo11g2562 189 ProSiteProfiles PB1 domain profile. 96 188 IPR000270 GO:0005515
Amo11g2562 189 Pfam AUX/IAA family 75 185 IPR033389 -
Amo11g2562 189 MobiDBLite consensus disorder prediction 12 47 - -
Amo11g2562 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 189 IPR003311 GO:0005634|GO:0006355
Amo11g2562 189 SUPERFAMILY CAD & PB1 domains 95 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2562 Amo-Chr11 133003250 133007284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2562 26 189 B3 DNA Binding Superfamily AT2G46530 28.814 1.27e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Amo11g2562 AUX_IAA 3.2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2562 K14484 - gmx:100527448 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2562 11 133003250 133007284 Amo11g2562 11 133003250 133007284 ECH