Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2560 AACCCCAAAAACAAACCCAACCCCTTTGTGGGGTTTCTATGCATCAACGGATTATTGGAAAAGTATATGAAGGCAAAGGAGTGTGGAGTTTGGCACCGTAGATTGTGGCTCATGTTAATTACGCGAGGTCGACGTCGCGGTCTTTCGTTGGTCGACGCTGTGGTCCATTGCCGTGTTTGGCAAGTGGAGGCTATGAGGATGTTGGAAGCAGGTTGGATAGTAGATGAGGTGGTAATAATGGCATCAAGTAGCCAGTTTTGCAAGGATGCGTGTATGTGGAATGAGCCTCTTGCGGATTACTGGATGGAGGGCAATGCGGGTGTGTCGAATTCACAGCTGGTAACGAAATGTTTCTCTTATTCTTTCAGGACACAATGTTTGTTATTTGATACGAGAGTAGAGGAAGATGCCGAGTTATCCGATTGGGAAGGAAGGGGGGCTTCAATGTTGCCCGGTTTTTTGGGTTTGGATGGGTTGCGAGTAGAAGATGTCCTCGAAATGGAGTTTTCAACACCTGAGGAGGCAGGCGGCTTCTATAACAACTACAGCCGACTAAAGGGCTTTGCATCAAGACGAGGGAAGATGGTTAGAAACACTGCCGGAGAGATCGTACGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCACAAAAGGGAGCATAAGGTAGTAACCCGATGCGGATGCCTGGCCGAGATGAGGATAAAGAGGAAAGACGGTAGTGGGAGGTGGTATGTCTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGATAGAAGTTTCTCAGCTAACAAGCATAAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCTTTCACAGCCCAACTAGCGGGCTTTAATTTGGTAACATTCACGAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGCGCATTGGGAGGCAATGCTAAATGAGTGTGGTGTTAGGGAGGTTGAGTGGGTAAAGGACTTGTACACCAAAAAGCACGCTTGGGCAACAGCATACATCTGTGGTAGATTTTTTGCTGGAATACAGACTATCTCTAGGTGCGAGTCACTACATGCCAAACTAGGGAGGTTTGTTGAGAGCAGGTACGGCGTGTTAGAATTTGTCACAAATTTTCAGAGGTGTGTGGATTTTCTGCGTGACACTGAGGACGAGCTTGAATTTCGTTCTTGGTACGGAACACCTGTACTACAAACCGAGTTTGTTGAGTTGGAAAAGTCCGGCTGGATGAAGTTCACCCGTGAAATGTTGCCAGATTCTGGGATAGCCTGA 1362 0.4633 NPKNKPNPFVGFLCINGLLEKYMKAKECGVWHRRLWLMLITRGRRRGLSLVDAVVHCRVWQVEAMRMLEAGWIVDEVVIMASSSQFCKDACMWNEPLADYWMEGNAGVSNSQLVTKCFSYSFRTQCLLFDTRVEEDAELSDWEGRGASMLPGFLGLDGLRVEDVLEMEFSTPEEAGGFYNNYSRLKGFASRRGKMVRNTAGEIVRYTFVCNRQGFREKKWLEKVDHKREHKVVTRCGCLAEMRIKRKDGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEIEVSQLTSIREIGISIPKIYESFTAQLAGFNLVTFTKQDMYNEIRKQRAHWEAMLNECGVREVEWVKDLYTKKHAWATAYICGRFFAGIQTISRCESLHAKLGRFVESRYGVLEFVTNFQRCVDFLRDTEDELEFRSWYGTPVLQTEFVELEKSGWMKFTREMLPDSGIA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2560 453 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 333 437 - -
Amo11g2560 453 Pfam FAR1 DNA-binding domain 178 267 IPR004330 -
Amo11g2560 453 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 160 324 - -
Amo11g2560 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 333 437 IPR031052 GO:0006355
Amo11g2560 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 160 324 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2560 Amo-Chr11 132986829 132993491 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g2560 FAR1 2.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2560 - - aip:107620408 476.863