Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2554 ATGGAGGTAGAGGATGATGACTGGGACTTGACCGCAGAAGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAAATTGCTCAACTTCGCGACTCTTCTACCCCTCCTTCTTCTCAACAATTCAATCTGCACCAACACCAACAACACCATTTTCCAAAACCACCTTCTGCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAGGGTGGACGCTTTGCCTCAAGGAGGTAGAGCATTACCCCCCTCATTGAAACCAGGGACAAAAAAGGATGAACCTTCTAAAGAACTGCCGAAGTTTTCCGTCAAATTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTAATAATTTCTGCTTTTCGAAGAATCCCTAGAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTTTCTTCCTTGTCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGTGGAGAACTTAGATCCTTTAGTGCACCGTGCCATTGTTTCTGCATCCGCTGTTCCAGATCTTCGAGATCGTTACGACAAGATCCCTAATTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTTTATTTTACAACATGGAGGACGTGCTCTTTTGGCAGATGAAATGGGACTAGGAAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAGTTGCACCATCATCATTGCGCCTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCTTCAGATATACTTATCGTCTTACCTCAAAGTGGTGGATCAAACAGAGGAGGCTTCAATATAGTATCCCCAAGTGCAAAAAGTAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCACAACATTGGACTTTAAGGTTGTGATTGCAGATGAATCACACTATCTGAAGAATGCTCAGGCAAAGAGGACTACTGCAACTCTTCCAGTTATAAAGAAAGCTCAATACGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGGCGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATACGAAGGCTTAAAAAAGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTAGCTGACAAGGACATGAAGCAAATTAACGCTTTATTCCGTGAGTTAGAGGTGGTAAAAGCCAAAATTAAGTCTGCCAAATCAAAAGATGAGGCTGAATCTCTTAAGTTTACTCAAAAGAATCTGATTAACAAGATATATACTGATTCTGCAGATGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATGCAATACATGAGTTCCTTCTTAGGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTCTATCAAGGCAGCTGTGTTATCCATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAGGCCGAAGATCGTGCTCATCGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAATCCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAATACCTTAGCTGTGTCAAATAATCAACCATTGAGTAGCCCTGCAAAGCATACTACTGTTGAGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAATGTGGATAGATCAGAACATCAGCCTGACCCAAAACGGCCCCGTCAGTCATGA 2130 0.4188 MEVEDDDWDLTAEELDSLERDAFQKIAQLRDSSTPPSSQQFNLHQHQQHHFPKPPSANHSQPFPPNPISDSRPQRVDALPQGGRALPPSLKPGTKKDEPSKELPKFSVKFFLHSSGHVAAKFQYDQVIISAFRRIPRASWNAKERLWMFPLSSLSEAEKVLGEISNYKVQVENLDPLVHRAIVSASAVPDLRDRYDKIPNYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCIQESWPVLIVAPSSLRLQWASMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSPSAKSNIRLDGLFNIISYDLVPKLQNMLTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKSAKSKDEAESLKFTQKNLINKIYTDSADAKIPAVLEYLGTVIEAGCKFLIFAHHQPMIDAIHEFLLRKKVGCIRIDGGTPAASRQQLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLAVSNNQPLSSPAKHTTVEHSPSKQRTLDQFVRRCDNVDRSEHQPDPKRPRQS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2554 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 429 IPR027417 -
Amo11g2554 709 Pfam Helicase conserved C-terminal domain 506 615 IPR001650 -
Amo11g2554 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 662 IPR027417 -
Amo11g2554 709 CDD SF2_C_SNF 501 626 - -
Amo11g2554 709 Coils Coil 458 478 - -
Amo11g2554 709 ProSiteProfiles HARP domain profile. 99 176 IPR010003 -
Amo11g2554 709 SMART ultradead3 202 395 IPR014001 -
Amo11g2554 709 Pfam SNF2-related domain 224 486 IPR000330 GO:0005524|GO:0140658
Amo11g2554 709 MobiDBLite consensus disorder prediction 27 55 - -
Amo11g2554 709 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 692 IPR030101 GO:0006281|GO:0031297|GO:0036310
Amo11g2554 709 SMART helicmild6 532 615 IPR001650 -
Amo11g2554 709 MobiDBLite consensus disorder prediction 662 686 - -
Amo11g2554 709 MobiDBLite consensus disorder prediction 27 101 - -
Amo11g2554 709 CDD DEXHc_HARP_SMARCAL1 206 429 - -
Amo11g2554 709 Gene3D - 468 699 IPR027417 -
Amo11g2554 709 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 692 - -
Amo11g2554 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 387 IPR014001 -
Amo11g2554 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 658 IPR001650 -
Amo11g2554 709 Gene3D - 183 435 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2554 Amo-Chr11 132810065 132817853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2554 505 655 RAD5 or RAD16-like Gene Family AT1G11100 33.775 4.62e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo11g2554 SNF2_N 9.7e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2554 K14440 - gmx:100778246 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3374 01 106193191 106197100 Amo11g2554 11 132810065 132817853 hybridization