Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2539 ATGGTGATTTTGAGTCTTGGGAGGAGGGGGAATGAAAGAAGTGAGGAAGGGAAGGGAAGGCAACTTGGGAAATACGAGTTGGGAAGGACGTTAGGCGAGGGCAATTTCGGAAAAGTCAAGTTTGCAAGGGATACTCATTCTGGACATCCTTTTGCAGTTAAGATCCTTGACAAGAACAAGATCACCACCCTTAACGTCTCTGATCAGATAAAGAGGGAAATTGCCACACTCAAACTACTCAAGCATCCAAATGTTGTTAGATTATTCGAGGTCTTGGCCAGCAAAACAAAAATCTATATGGTACTTGAGTATGTGACAGGAGGGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTTCTGAAACTGAAGGTAGGAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTATTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTAGTGGATGACAAAGGAAACATTAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACATTTCAGGGGAGATGGATTATTGCATACAACTTGTGGAAGTCCTAATTACGTCGCGCCGGAGATTCTTGCTAATAGGGGCTACAGTGGTGCAACATCAGATGCATGGTCTTGTGGTGTGATCTTGTATGTAATTCTAACAGGATACCTCCCATTTGATGACAGAAATCTTGCAGTTCTTTACCAAAAGATTTTGAAAGGAGATGTTCAGATACCAAAATGGCTTTCAGCCGGTGCCCAAAACATGATAAAAAAGATTCTTGATCCCAACCCTGAAACCCGAATAACAATGGCTGCGATCAAAGAAGATCCATGGTTCAAACAAGGATATGCTCCGGCAACTCATGAGGATGAGGAAGAGGACATATATATTGACAATGAAGCCTTTGCCATGAATGAAGTGCAACTAGACGCAGAGCAAAGGAGTCCACAATCACCAACTCTTATCAACGCATTTCAGTTGATTGGGATGTCGTCATGCCTCGACCTCTCTGGATTTTTTGAGAAAGAGGATGTCTCTGAAAGGAAGATAAGATTCACGTCCAACCTTTCGGCTAAAGATTTGGTAGAGAGGATTGAGGATATTGTGACGAAAATGGGATTTCAAGTCCAGAAGAAAAATGGCAAATTGAAAGTTATACAAGAGAACAAAACACACAAAACCCTTAGCAGCCTCTTAGCTGCGGCAGAGGTTTTTGAAATAAGCCCATCATTGTATGTTGTAGAATTAAGGAAGTCTTATGGAGATGCATCTATATATAGACAGTTATGCAAGAAGTTATCAAATGATTTGGGTGTTCCTCCAAGGCAAGCGTTGCTTAGCTCTGAAATGAATTAG 1359 0.4135 MVILSLGRRGNERSEEGKGRQLGKYELGRTLGEGNFGKVKFARDTHSGHPFAVKILDKNKITTLNVSDQIKREIATLKLLKHPNVVRLFEVLASKTKIYMVLEYVTGGELFDKIASKGKLSETEGRKLFQQLIDGVSYCHNKGVFHRDLKLENVLVDDKGNIKITDFGLSALPQHFRGDGLLHTTCGSPNYVAPEILANRGYSGATSDAWSCGVILYVILTGYLPFDDRNLAVLYQKILKGDVQIPKWLSAGAQNMIKKILDPNPETRITMAAIKEDPWFKQGYAPATHEDEEEDIYIDNEAFAMNEVQLDAEQRSPQSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSAKDLVERIEDIVTKMGFQVQKKNGKLKVIQENKTHKTLSSLLAAAEVFEISPSLYVVELRKSYGDASIYRQLCKKLSNDLGVPPRQALLSSEMN* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2539 452 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Amo11g2539 452 Gene3D Kinase associated domain 1, KA1 318 440 - -
Amo11g2539 452 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 448 - -
Amo11g2539 452 Pfam NAF domain 320 379 IPR004041 GO:0007165
Amo11g2539 452 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Amo11g2539 452 CDD CIPK_C 324 435 - -
Amo11g2539 452 PANTHER SERINE/THREONINE KINASE 16 448 - -
Amo11g2539 452 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2539 452 SUPERFAMILY Protein kinase-like (PK-like) 22 324 IPR011009 -
Amo11g2539 452 CDD STKc_SnRK3 24 279 - -
Amo11g2539 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Amo11g2539 452 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2539 452 Gene3D Transferase(Phosphotransferase) domain 1 105 308 - -
Amo11g2539 452 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2539 452 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2539 Amo-Chr11 132575100 132580777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2539 88 448 CBL-interacting serine-threonine protein kinases AT3G17510 68.871 1.72e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo11g2539 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2539 K07198 - twl:120011929 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3370 01 106142720 106148223 Amo11g2539 11 132575100 132580777 hybridization