Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2482 ATGATTGATGAAGCTGACAGGATATTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTGCTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGCATAGATCGTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATGTACACCGCCTTGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTCGCAAACCCACCAAATGTGACTCTGAACTTGAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACACCAGCCCTCATGGAAAAAGAAATGTTCATTCTAAAAAGCAATTTAGATGGCGAGGAGGAATTCGAATGAGTCTAACCAGATGGTCCAGGAGGCTAGGGCAAGGTCCCGGGCCAGGACTGGTGGTGCCAGGGCAGTTATCCCTCCCCCTCATCCTCCTCGAAATTTGGGGACTCCTTCTGAACCTATTGTTATCTCTTCTTCTGCTCCTTCTCAGCCGTCCCCTCCCCCCCGATCCTCCCCTGAGCCTGAAAGGAAGAAGCGCAAGGCTTTAG 1209 0.4342 MIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAHRSYLLAYNSHSMKDIFNVHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHTSPHGKRNVHSKKQFRWRGGIRMSLTRWSRRLGQGPGPGLVVPGQLSLPLILLEIWGLLLNLLLSLLLLLLSRPLPPDPPLSLKGRSARL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2482 402 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 55 IPR014001 -
Amo11g2482 402 PANTHER ATP-DEPENDENT RNA HELICASE DDX18 1 303 - -
Amo11g2482 402 CDD SF2_C_DEAD 70 200 - -
Amo11g2482 402 SMART helicmild6 109 190 IPR001650 -
Amo11g2482 402 SMART DUF4217_3 230 293 IPR025313 -
Amo11g2482 402 Pfam Helicase conserved C-terminal domain 85 189 IPR001650 -
Amo11g2482 402 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1 9 IPR000629 -
Amo11g2482 402 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 85 239 IPR001650 -
Amo11g2482 402 MobiDBLite consensus disorder prediction 300 324 - -
Amo11g2482 402 MobiDBLite consensus disorder prediction 301 315 - -
Amo11g2482 402 PANTHER RNA HELICASE 1 303 - -
Amo11g2482 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 204 IPR027417 -
Amo11g2482 402 Gene3D - 67 309 IPR027417 -
Amo11g2482 402 Gene3D - 1 66 IPR027417 -
Amo11g2482 402 Pfam Domain of unknown function (DUF4217) 231 291 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2482 Amo-Chr11 130581139 130587995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2482 1 200 Eukaryotic Initiation Factors Gene Family AT5G11170 31.841 1.49e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2482 K13179 - gmx:100797375 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2482 11 130581139 130587995 Amo11g2482 11 130581139 130587995 ECH
Amo01g4033 01 114504546 114509143 Amo11g2482 11 130581139 130587995 hybridization