Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2444 ATGCATGGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGAAAAGGACAACCGCCTCTTGCCATACTCATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCAGCTGAACACTCTTCTGCCCCTTTCCGAGCTCCGGAGCTGTGGGAATGCCCAAGCCAAGGTGATATAGACGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGATGAGCCTGATGGAGACCTCCGATCAGCTGTTTTAAATGCTAAAATCAAATGGCCAACTGAACGTAAGTCTCAATATCCAGACGCTCTTCATCAGTTTGTATCGTGGATGCTTCAGCCCCAGATTGCTGTGCGGCCCCGGATAGATGATATTGTTATTCATGTTGATAAGTTGATTGCAAAGTTCTCTGGTTGA 516 0.4554 MHGLDTPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKHIGSRSEALQLQEWAAEHSSAPFRAPELWECPSQGDIDERTDVWSLGCTLYAIMYGVSPFEYALDEPDGDLRSAVLNAKIKWPTERKSQYPDALHQFVSWMLQPQIAVRPRIDDIVIHVDKLIAKFSG* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2444 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 8 20 IPR008271 GO:0004672|GO:0006468
Amo11g2444 171 Pfam Protein kinase domain 9 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2444 171 SMART serkin_6 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2444 171 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 170 - -
Amo11g2444 171 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g2444 171 Gene3D Transferase(Phosphotransferase) domain 1 1 169 - -
Amo11g2444 171 PANTHER - 1 170 - -
Amo11g2444 171 SUPERFAMILY Protein kinase-like (PK-like) 6 161 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2444 Amo-Chr11 129626388 129628281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2444 7 170 MAP Kinase Kinase Kinase AT3G59830 28.049 8.04e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Amo11g2444 Pkinase 1.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2444 K08856 - han:110917791 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2444 11 129626388 129628281 Amo11g2444 11 129626388 129628281 ECH
Amo01g4058 01 114928440 114932821 Amo11g2444 11 129626388 129628281 hybridization