Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2434 ATGGCAGATGTAACGTACCTTCTCCACCATCACCACCCTGAACACGACGACGACCCTCACCAAACGCTAACTCTACCACCCTACTGGTCTCCTCACGATTTCGATTTCTACGCCTCCGATCCCGAATTCCCCCAACAACCGCATAACAACCACCATCACCACCACCACCACCACCATCGCCACCACCACTTTCCCCAATCTGGTTCGTCCACCATTCTCGACCGAGAGAATCAGGTCAATTTCGTTATGGATTTATTCCAGCAGCGTGTTGAGCAGTCACAGGTCATGGGACACCCTTTAAACGACGCCGTTTTCGGGAGCAGCGATTTTGGGATTGAAATGGACGCTTTTACCCTTGATTTAGGGTTCCCTTCTGACAGAGACTCCCACCACCGCGCCAATGCCGCTGGAGGGGATTCTTCCGCCGGTGGTGTCGTTGTCGTCGACGATGACGATTTCTTCTTCGGGAGGAGGGTTTCGGGGTCCGAATCCGGCGACGCGGCGGCGTTCGAGAACTGCGTGAGCCTCCTAGGGTTCGGATCGGACTCCGACGAGGAAGAAGACAACGGCGTTCTCCGAATCTGCGTGCATTCCGACGAGGATTACAATTTGCACGACGAAAACGACGACGTTTCGAGTATTCCTCTGTGCTGGGACTCGCTGCAGTTGGAAGATAACAGAGAGAACAACGACGATTTTGAGTGGGAGGAGGTTGATGGAAGGGTCGACGAGAGGGAAGTTCTAAGCATGCTCACCGTCGAAGACGATAGATCCGGCTCGGTGTCCGTTTCGCCGATCACCGGAATCGAAGTAGCCGAAGAAGAAGAGGTTAACGTTTTTAGGGTTGGAGGAATGGAGAATTTGGAATGGGAAGTGCTTCTGAATGCAAACAATTTGGACACAATCACGAGCCCGGATTTGGATCACGATTCCGAACCCTATTTTGGTGATCACGATGATTATATTTACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGCCGATAATGATAATCCATTGAACGGTAGGCCTCCGGCTTCGGCTGCCGTCGTCCGGAGCCTGCCGTCAGTGGTGGTAACAAAGGATGACGTGGAAGGGAACAATGCGCTCTGTGCTGTTTGCAAGGATGAGTTTTGTGTTGGGGAGAATGTAAAGGTGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCATGGTTGGGGATTAGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCCACTGATGATGCTGATTATGAACGTAGGAGGCTGCACAGATCTGGCCAGAGGATTTGA 1308 0.5214 MADVTYLLHHHHPEHDDDPHQTLTLPPYWSPHDFDFYASDPEFPQQPHNNHHHHHHHHHRHHHFPQSGSSTILDRENQVNFVMDLFQQRVEQSQVMGHPLNDAVFGSSDFGIEMDAFTLDLGFPSDRDSHHRANAAGGDSSAGGVVVVDDDDFFFGRRVSGSESGDAAAFENCVSLLGFGSDSDEEEDNGVLRICVHSDEDYNLHDENDDVSSIPLCWDSLQLEDNRENNDDFEWEEVDGRVDEREVLSMLTVEDDRSGSVSVSPITGIEVAEEEEVNVFRVGGMENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYIYTAEYEMMFGQFADNDNPLNGRPPASAAVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGENVKVLPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDDADYERRRLHRSGQRI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2434 435 CDD RING-H2_RNF126_like 372 413 - -
Amo11g2434 435 Pfam Ring finger domain 372 413 IPR001841 -
Amo11g2434 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 419 IPR013083 -
Amo11g2434 435 SUPERFAMILY RING/U-box 354 419 - -
Amo11g2434 435 SMART ring_2 372 412 IPR001841 -
Amo11g2434 435 ProSiteProfiles Zinc finger RING-type profile. 372 413 IPR001841 -
Amo11g2434 435 MobiDBLite consensus disorder prediction 49 65 - -
Amo11g2434 435 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 69 428 - -
Amo11g2434 435 PANTHER - 69 428 - -
Amo11g2434 435 MobiDBLite consensus disorder prediction 40 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2434 Amo-Chr11 129279892 129281611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2434 73 419 C3H Transcription Factor Family AT5G60820 39.669 1.57e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2434 - - adu:107469048 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2434 11 129279892 129281611 Amo11g2434 11 129279892 129281611 ECH
Amo01g4063 01 114990531 114992173 Amo11g2434 11 129279892 129281611 hybridization