Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2423 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTCACGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATCTCAGTGCTATGCGATGCCGAAGTCGCACTRATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGTATGGAAAGGATTCTTGAACGGTATGAGAGGTACTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCCGCCAAATGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACACAGAAATCAAAGGAATTTTATGGGGGAAGGTCTCGATACCCTAAGTCTGAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAGGAACAAAACAATGTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGCACTGGCCCAGACTCAAACRCAAGAGGAGCAACTTGGCCTGCAAACTACTGGTGATGTGCCCTCTCTCCTTATAACCGAACCGTTGGAGTCCTTCAATAATATTGGAGGCAGTAGTACCCCTCAAGCACCTGGAGGTAGTGATGGATTATTATTAGGAGATAATGAAGAAAGTACTACACCAACTCAACCTAATAATAATAATAACCTTCTTCCTCCTTGGATGYTTCGCCCTACAATAAATGAATAG 783 0.4317 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAEKQLISNDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKKIKEKEKALAQTQTQEEQLGLQTTGDVPSLLITEPLESFNNIGGSSTPQAPGGSDGLLLGDNEESTTPTQPNNNNNLLPPWMXRPTINE* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2423 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Amo11g2423 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 MobiDBLite consensus disorder prediction 185 260 - -
Amo11g2423 260 MobiDBLite consensus disorder prediction 185 223 - -
Amo11g2423 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Amo11g2423 260 Coils Coil 123 146 - -
Amo11g2423 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 Coils Coil 152 193 - -
Amo11g2423 260 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo11g2423 260 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g2423 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo11g2423 260 MobiDBLite consensus disorder prediction 231 252 - -
Amo11g2423 260 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Amo11g2423 260 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g2423 260 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 188 - -
Amo11g2423 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2423 Amo-Chr11 128845643 128851769 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2423 1 215 MADS-box Gene Family AT1G26310 62.222 3.25e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo11g2423 K-box 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2423 K09264 - gmx:100784742 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2423 11 128845643 128851769 Amo20g3154 20 136571325 136580300 ECH
Amo11g2423 11 128845643 128851769 Amo11g2423 11 128845643 128851769 ECH
Amo01g4073 01 115382996 115390712 Amo11g2423 11 128845643 128851769 hybridization
Amo11g2423 11 128845643 128851769 Amo10g2556 10 88247581 88255981 PCT
Amo10g2556 10 88247581 88255981 Amo11g2423 11 128845643 128851769 PCT