Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2418 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAATCGCGGCAAACTCTACGAGTTTAGCAGCACTTCCAGCATGATGAGAACTCTGGAGAAGTATCACAAGTATAGTTACAGTGCTCTCGAGTCTGGTCGACCAATCAGTGACACGCAGACAAATTACGAGGATTATAAGAGACTAAAAGACAATGTAGAAGCTCTCCAACGTTCTCAGAGGAACCTACTGGGGGAAGATCTTGCTCAAATGAATACAACTGAGCTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTCAAGAATATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAACCGGGAAATGGCGCTTGTTGAAACAAATAATGTGCTAAGGAGTAAGATGAAACAGTTAGAAGAACTGAATAATCACTCATCAGAAGTGGCTTTGGAAGACGTGGGCCCCACCATTCACTACAACCGCTTTCCTTCTCAATCAGATCACCCATTTTTCCAACCTGTTCTAGGAGTTAATTCCAACTTGCAAATTGGATACAATCAGAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACTATGCAGGGATTCGTCTCTGGGTGGATGCTTTGA 744 0.4301 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALESGRPISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLADLQNREMALVETNNVLRSKMKQLEELNNHSSEVALEDVGPTIHYNRFPSQSDHPFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2418 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 Coils Coil 117 144 - -
Amo11g2418 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Amo11g2418 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Amo11g2418 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Amo11g2418 247 Coils Coil 84 114 - -
Amo11g2418 247 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Amo11g2418 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 Coils Coil 160 180 - -
Amo11g2418 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Amo11g2418 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g2418 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo11g2418 247 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo11g2418 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2418 Amo-Chr11 128754692 128762562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2418 1 247 MADS-box Gene Family AT5G15800 51.136 2.75e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo11g2418 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2418 K09264 - gmx:100804810 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2418 11 128754692 128762562 Amo20g3155 20 136602739 136610804 ECH
Amo14g3842 14 143935170 143940484 Amo11g2418 11 128754692 128762562 ECH
Amo11g2418 11 128754692 128762562 Amo11g2418 11 128754692 128762562 ECH