Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2392 ATGGAATGGAATGCAATCACTAAATCTGATGTTGTTGATGAATACAATTTTAGGTGTATTGTTGATGAACAATTTGTCCCAAAGGTTGGGATGACTTTCAAGACACTTGAAGAAGCTAGAAAATTCTACAAAGATTATTCCAAACTTGCTGGTTTTTCTACAAAAATAAGGAACACCACTCGAAAGGAAGATGAAATTAAGAATAAACTAATTACATGTAGTAGAGAGGGGAAGCGAAAATCCAAGATATCTCCAACTCTGAAGACAAACTCCTCAGCTGGAATAAACTGCCCAGCCAGGATTTATGTATATATATTAAAGGATGTTGGTCTTTGGATAATTTCTAAAGTTGTTCTAAATCATTCACACCATTGCTGTCCAAATCGAGCAGAGATGCTTAAACAACACAGGGAGCTAAGCATGTTTGTGTGTCGTACCATTGAAAATAACGAGGAAGCCGGAATCAGACCGAAGCTATTTGAAGATCGCCATTTATGGATTCTAGAAGCAAACAGTAAAGAGAGAGAGAGAGAATTTGATGCTGCCGATTTTTATACCGTGATACTGTGTGCAACAAAATCACCAATAGAGACTCAATTTCAGTACGTGTATACTCACGAGAAATTTAGAGAAGTTCAAGTACAATTCAGAGAAAAGGTGAATTGCATCACAAGATCAATGAATTCCACTTTAGGTTTTATGGCATATGAAGTTGTAGAGCAGGTTTCTAACTCCACATTCAACAAGTTTATTTTTACATACGACACGATATCACGCGAAGTAAAGTGCCAGTGCTTGTTGTTTGAGTCAAGGGGTATACTGTGTCGTCATTCTCTGAGAGCCTTAGGCTTTGAGCGAGTAGAAAAAGTGGCACCAAAATATATATTGGAACACTGGAGTAAGAACGTAAAGAGGAGGCACACACATATCAAGAGTAGCCAAGACGAGCCTCTGTTGGAGCCAAGAAGTAAGAGGTTCGACGATTTGGTATTTCAGTCGCACAATATTTGCGAATTTGTGTCAGAATTCAAGGAGTTGACTGGAATTCTGCACCGGACTTTTGATAATTCGAACCTTTTAGATGGTGGGTCAATGATTTAG 1101 0.3824 MEWNAITKSDVVDEYNFRCIVDEQFVPKVGMTFKTLEEARKFYKDYSKLAGFSTKIRNTTRKEDEIKNKLITCSREGKRKSKISPTLKTNSSAGINCPARIYVYILKDVGLWIISKVVLNHSHHCCPNRAEMLKQHRELSMFVCRTIENNEEAGIRPKLFEDRHLWILEANSKEREREFDAADFYTVILCATKSPIETQFQYVYTHEKFREVQVQFREKVNCITRSMNSTLGFMAYEVVEQVSNSTFNKFIFTYDTISREVKCQCLLFESRGILCRHSLRALGFERVEKVAPKYILEHWSKNVKRRHTHIKSSQDEPLLEPRSKRFDDLVFQSHNICEFVSEFKELTGILHRTFDNSNLLDGGSMI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2392 366 Pfam FAR1 DNA-binding domain 41 126 IPR004330 -
Amo11g2392 366 ProSiteProfiles Zinc finger SWIM-type profile. 236 286 IPR007527 GO:0008270
Amo11g2392 366 SMART 26again6 261 288 IPR006564 GO:0008270
Amo11g2392 366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 181 353 IPR031052 GO:0006355
Amo11g2392 366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 149 IPR031052 GO:0006355
Amo11g2392 366 PANTHER OS03G0843700 PROTEIN 181 353 - -
Amo11g2392 366 PANTHER OS03G0843700 PROTEIN 19 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2392 Amo-Chr11 127514812 127517530 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g2392 FAR1 2.6e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2392 - - adu:107484182 399.053