Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2371 ATGGCGTCGTCATCGGCGTCAGCGAAGCGATGCCACTATGAGGTTCTCGGCCTCCCCCGTGACTGCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTAGCCCTGCAGCGCCACCCCGACAAGCTGGTCCAATCAGGTATCTCCCAATCGGAAGCCACTGCGCAGTTTCAGGAGCTTCAGCACGCCTACGAGGTCTCTCTGATCCCAAAGAACGCTCCTGGTACGACTCTCACGCTCTCAGATCCTCTTCTCCGATCCCGACACCCTCCGAACTCCTCGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTTCTCCGGCTACTCCGATTCCGCAAGCTCCTGTTATGGGTAATTTAGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCAACCGGCGGATTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGATTGAGGATGAGGATGAGGAGGTTGCTATGGAGATTTGGAGAAGTGAGGAGGATGCTGATCACGTGGTTGAGGATTTGGAGGAGAGGATTAGAGATAGTCTTAATGTTGCAGAGGAGAGCACTAGAAATGGAGTCGAGCCTGATGATGATGACGAGGAAGAATTTTATGATGCTTCACATGAAAAGGAAGGCAATGTGGTTAGTGTGTCTGTAGATGGTGATGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGATTGCAGGTCACAAGAGCAGAAAGCCACATGCTTCAACACGCAAGCCCAATGCCCCAGTGCCTCCAACTCAAATTGAGAATGAGGATGATGGGGTTGGCCCTATGGAATACAAAAACCGGAAGGGCGCAAGAAAGAAACGCGGATCCAAGAAAGAAAAGGGTAGGAAAAATCCAGAAGAATCCCGCACAGCAGCCGTCAATGGCGATGAAGAGCATAATAACAACAACGATGATGGGAATGGCAATTCTCATGCAGAGGAGTCTTCCTTCCAATTTAACGTGGAGAATGTGATTAATGGTAAAGAGAACGGGCATGATGGTAGAGATAAGACTTCAAATAAACCAGCTGATAAGAGAGGAGATGCAAAGGACACAAAATCCAAAGCTAAAACTTCATCAAAAGGAAGAAAAGCCAAGGGTGCGTCAAAGAATCATGGCAATACTTGCGAGACCTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAGGTAGATAG 1374 0.4796 MASSSASAKRCHYEVLGLPRDCTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVSLIPKNAPGTTLTLSDPLLRSRHPPNSSSPTSSRFSPIPSSPATPIPQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPTGGFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDEDEEVAMEIWRSEEDADHVVEDLEERIRDSLNVAEESTRNGVEPDDDDEEEFYDASHEKEGNVVSVSVDGDDDDDEIGALEAMIAGHKSRKPHASTRKPNAPVPPTQIENEDDGVGPMEYKNRKGARKKRGSKKEKGRKNPEESRTAAVNGDEEHNNNNDDGNGNSHAEESSFQFNVENVINGKENGHDGRDKTSNKPADKRGDAKDTKSKAKTSSKGRKAKGASKNHGNTCETCGEEFESRNKLHKHLGDSGHAKIKGR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2371 457 MobiDBLite consensus disorder prediction 226 457 - -
Amo11g2371 457 MobiDBLite consensus disorder prediction 79 105 - -
Amo11g2371 457 CDD DnaJ 11 66 IPR001623 -
Amo11g2371 457 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 66 IPR044648 -
Amo11g2371 457 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 160 457 IPR044648 -
Amo11g2371 457 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 112 156 IPR044648 -
Amo11g2371 457 PRINTS DnaJ domain signature 31 46 IPR001623 -
Amo11g2371 457 PRINTS DnaJ domain signature 52 72 IPR001623 -
Amo11g2371 457 PRINTS DnaJ domain signature 13 31 IPR001623 -
Amo11g2371 457 Pfam Zinc-finger double-stranded RNA-binding 160 185 IPR022755 -
Amo11g2371 457 MobiDBLite consensus disorder prediction 430 457 - -
Amo11g2371 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 427 456 IPR013087 -
Amo11g2371 457 SMART dnaj_3 10 85 IPR001623 -
Amo11g2371 457 Coils Coil 217 237 - -
Amo11g2371 457 MobiDBLite consensus disorder prediction 333 357 - -
Amo11g2371 457 Gene3D Classic Zinc Finger 148 206 - -
Amo11g2371 457 MobiDBLite consensus disorder prediction 381 411 - -
Amo11g2371 457 Gene3D DnaJ domain 1 97 IPR036869 -
Amo11g2371 457 SUPERFAMILY Chaperone J-domain 10 66 IPR036869 -
Amo11g2371 457 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Amo11g2371 457 SMART ZnF_U1_5 157 191 IPR003604 GO:0003676|GO:0008270
Amo11g2371 457 ProSiteProfiles dnaJ domain profile. 11 72 IPR001623 -
Amo11g2371 457 ProSitePatterns Zinc finger C2H2 type domain signature. 429 451 IPR013087 -
Amo11g2371 457 MobiDBLite consensus disorder prediction 358 378 - -
Amo11g2371 457 MobiDBLite consensus disorder prediction 79 115 - -
Amo11g2371 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Amo11g2371 457 SMART c2h2final6 160 184 IPR013087 -
Amo11g2371 457 SMART c2h2final6 427 451 IPR013087 -
Amo11g2371 457 Pfam DnaJ domain 12 66 IPR001623 -
Amo11g2371 457 Coils Coil 181 201 - -
Amo11g2371 457 SUPERFAMILY beta-beta-alpha zinc fingers 149 203 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2371 Amo-Chr11 126740845 126744385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2371 160 457 C2H2 Transcription Factor Family AT1G74250 32.121 5.83e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g2371 DnaJ 2.7e-15 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2371 K09506 - gmx:100788305 304.293