Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2364 ATGGACGGCTACAGATTCTCGAACCGAAATCAAGGGTTGATATCGGCTTTTCCCCAGGTTCCAACGATGGCTTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTATTTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGGATTCAAGTTTGAAATACCTTATAAGTTGCATCCATCATGTTTTATTTTTGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGTCTGTGTATGTTTTCAGGATCTTCATGGTCGCCGGATTAGGTGGCTATGACAATAACTATTCCACTCCTGACAGTTSTGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGWTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGATATGGCAGTAGTGRCCAACTGGATAACAAAGAAACCAGCATTGAAGGCGAWGATATGGACTTAGTMGAAGGAAATTACAAAGATGACAATGATGATACCGATGACTTTGCCAAAAGGGCYTGA 849 0.437 MDGYRFSNRNQGLISAFPQVPTMAFFGRIGNLLRNAANKQISSELLSSPSIFQAIRCMSSAPSSKLFIGGGFKFEIPYKLHPSCFIFGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQSVYVFRIFMVAGLGGYDNNYSTPDSXGSSSAGGSGDYGGNSGNFGVAXGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSXQLDNKETSIEGXDMDLVEGNYKDDNDDTDDFAKRA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2364 282 SMART rrm1_1 83 156 IPR000504 GO:0003723
Amo11g2364 282 SUPERFAMILY RNA-binding domain, RBD 84 188 IPR035979 GO:0003676
Amo11g2364 282 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 281 - -
Amo11g2364 282 MobiDBLite consensus disorder prediction 167 196 - -
Amo11g2364 282 MobiDBLite consensus disorder prediction 255 282 - -
Amo11g2364 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 148 IPR000504 GO:0003723
Amo11g2364 282 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 23 281 - -
Amo11g2364 282 MobiDBLite consensus disorder prediction 167 183 - -
Amo11g2364 282 Gene3D - 77 205 IPR012677 -
Amo11g2364 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 148 IPR000504 GO:0003723
Amo11g2364 282 MobiDBLite consensus disorder prediction 222 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2364 Amo-Chr11 126259023 126261461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2364 63 145 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 2.40e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2364 K12741 - gmx:100799124 184.496