Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2348 AGAGAGAGAGAGAGAGAGAGAGAGATGAACGGTTTAAGAGGTGAAAGAGCTCCTCTATTGGAAGCTGAGCGCGGCGGAAGGGGAAAGAGGGATGGAGCTTCAGAGGACCAAGTCTCAGACCTTGAGCACGGTGACGGAGTGCCGGTTGCAGCGAATGTGGGATTCTTCCGAGTGTTTTCACTTGCAAAACCAGAGGCTGGAAATTTGGTGATTGGTACAGGGGCTTTGTTGATTGCGGCCACATCAAGTATCTTAGTTCAAAAATATGGTGGCAAGATAATTGACATTGTGTCAGGAGATCTAAGAACTCAAGAGCAGAGAGATGCGGCTTTAAATGCTGTCAAGAACACTATTATAGAGATCTTTCTAATTGTGTTTCTTGGTTCAATTTGCACAGCACTTCGAGCTTGGCTATTTTCTTCTGCTAGTGAAAGAGTTGTCGCACGGCTAAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATTGCTTTCTTCGATGTTACTCGAACGGGAGAACTCTTAAGTAGGTTGTCGGAAGATACACAGATCATAAAGAATGCCGCAACTACCAATCTTTCTGAGGCCATGAGGAACCTAGCAACAGCACTTATGGGTCTCAGCTTCATGTTTGCAACATCTTGGAAGTTAACATTGTTGGCTTTGGCTGTTGTGCCTGTAATTTCTGTTGCTGTCCGTAAATTTGGGCGTTTCCTGCGTGAACTATCTCACAAAACTCAAGCTGCAGCTGCAGTAGCATCTTCAATTGCTGAGGAATCATTTGGTGCCATAAGAACAGTAAGATCTTTTGCCCAAGAAGATTATGAAATTTCACGCTACTCTGAGAAAGTTAGTGAGACACTCAGCCTTGGCCTTAAGCAAGCTAAAGTCGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCGTCCACACTTTCTGTTATCGTAGTAGTTATATATGGAGCTAGCTTGACAATCAAGGGTCACATGACCTCGGGTGATCTCACGTCTTTCATTCTTTATAGTCTCTCAGTGGGATCTTCTATATCTGGCTTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCCGAAGGGTATTTCAACTTTTGGATCGTGAGTCGTCAATGCCTAAGCCAGGAAATAAGTGTCCTCTTGGTGATCAAGATGGGGAAGTGGAACTCGATGATGTATGGTTTTCCTATCCGTCGCGCCCTAATCACATGGTGCTCAAGGGCATTACAATTAAACTGCTGCCTGGCTCAAAAGTTGCTCTTGTTGGTCCAAGTGGTGGCGGGAAGACAACAATAGCTAACTTGATTGAAAGATTTTATGACCCAAGCAAAGGAAAGATTTTGCTGAATGGGGTTCCTCTGGTAGAAATATCTCACAAGCATTTGCACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACATTGTTCAACTGTTCCATAGAGGAGAACATAGCCTATGGTTTTGACGGCAAAGTCGACGAAGTTGACATAGAAAATGCGGCTAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAGAAATACAAGACCTTTGTTGGAGAGCGTGGGGTACGGCTTTCGGGAGGGCAGAAACAGAGAATTGCGATTGCTAGAGCCCTGCTCATGGATCCAAAAATTCTCCTCCTGGATGAAGCCACCAGTGCCCTGGATGCCGAAAGCGAGTACCTAGTGCAGGATGCCATGGATTCTCTAATGAAGGGAAGAACTGTTCTAGTCATTGCTCATAGATTATCAACTGTCAAAACTGCCGATACTGTAGCGGTTATCTCGGATGGCCAAGTAGTTGAGAGTGGCACGCACGATGAGCTTCTCAGCAAGAATGGTGTCTATACTGCATTAGTCAGGAGACAACTGCAGACAGCAAAAACCGAAAATGTAGTTTAG 1929 0.4474 REREREREMNGLRGERAPLLEAERGGRGKRDGASEDQVSDLEHGDGVPVAANVGFFRVFSLAKPEAGNLVIGTGALLIAATSSILVQKYGGKIIDIVSGDLRTQEQRDAALNAVKNTIIEIFLIVFLGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEAMRNLATALMGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEISRYSEKVSETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGASLTIKGHMTSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRESSMPKPGNKCPLGDQDGEVELDDVWFSYPSRPNHMVLKGITIKLLPGSKVALVGPSGGGKTTIANLIERFYDPSKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDEVDIENAAKMANAHEFISKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHDELLSKNGVYTALVRRQLQTAKTENVV* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2348 642 Gene3D ABC transporter type 1, transmembrane domain 121 391 IPR036640 GO:0005524|GO:0016021
Amo11g2348 642 MobiDBLite consensus disorder prediction 1 42 - -
Amo11g2348 642 MobiDBLite consensus disorder prediction 1 43 - -
Amo11g2348 642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 631 IPR003439 GO:0005524
Amo11g2348 642 Pfam ABC transporter 412 562 IPR003439 GO:0005524
Amo11g2348 642 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Amo11g2348 642 CDD ABC_6TM_AtABCB27_like 72 368 - -
Amo11g2348 642 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524
Amo11g2348 642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 360 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g2348 642 Gene3D - 392 638 IPR027417 -
Amo11g2348 642 SMART AAA_5 421 615 IPR003593 -
Amo11g2348 642 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 9 636 - -
Amo11g2348 642 Pfam ABC transporter transmembrane region 70 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo11g2348 642 PIRSF ABC_prm/ATPase_B 23 642 - -
Amo11g2348 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 632 IPR027417 -
Amo11g2348 642 SUPERFAMILY ABC transporter transmembrane region 57 375 IPR036640 GO:0005524|GO:0016021
Amo11g2348 642 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 9 636 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2348 Amo-Chr11 125398988 125403596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2348 122 632 Calmodulin-binding Proteins AT2G36910 40.655 4.70e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2348 - - var:108320153 1085.86