Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2344 ATGGCGAATGTAACAATGGCATCAAGTAGCAAGTTTTGCAAGGATTCGTGTATGTGGAATGAGCCTCTTGCGGACAACTGGATGGAGGGCAAGGCTGGTGTGTCGAATCCACAGGACACAATGTATGATACAAGAGTGGAGGAAGATGCTGAGTTATCCGATTGGGAGGGGAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCAAGCAGAAGATGTTCTTGAAATGGAGTTTTCTTCACCTCAAGAGGCAAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTCGTTTGTAATAGGCAGGGATTTCGAGAGAAGAAATGGTTGAAAAAGGTTGATCGCAAAAGGGAGCATAAGGTTGTAACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGCGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCATTCGCAGCACAACTAGGGGGTTTTAATCTGGTAACATTCACAAAACAAGATATGTGTGTGGACTTTCTTCGTGACACCGAGGACGAGCTAGAGTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTTGTTGAGCTGGAAAAGTCTGGATGGAGTATGTTCACCCGCGAAATGTTTCTCAGATTCCGGGATAGCCTGAAACGTGAGAACCCTCATGCATATACTCTCCAGAAGTATCGGAGGCCTGGGATGAATTGGAAGGTATATAGGGACCATATCTCGAACAGATTTAGTTGCACCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTGTGTGTAAGTCTAGACTTGGTGGAAATCCCCAAAAGCCTTGTCCTCCGAAGATGGTCTAAGGCAGCCAAATTGGAGATCCATAACCAATGTGTTGAGCAACATACTGCTAACCCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGTGATGAAGACTTCAAACTTTACTCAAAGAAGCTTTTGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGGTTAAGACCATCAACGGATGATATCACAACAGCAAATGATTGCGGGGTGAAGGACCCTATTCGTGTCAGAACAAAAGGCACGGGTCGGATGAGCCAAGGAGGCGGTTCTGCGTCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGACACCGGAGGACTAGATGCCCCAACGGAGCCGGGCAAGCGCCAACGAGGAACAATGAATCACATGGTGGAAGAAATAAACGCAAGCGATCTAAGGTACCCGTCGTTGTCCCGGATAATTGTCACGCTGAAAATGCATTTCAAGCCGGAAGCGACAAACGGGATCAATTTTCGCTTGCAGACCCATGA 1608 0.477 MANVTMASSSKFCKDSCMWNEPLADNWMEGKAGVSNPQDTMYDTRVEEDAELSDWEGRGASMLPVFLGLDGLQAEDVLEMEFSSPQEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLKKVDRKREHKVVTRCGCMAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMCVDFLRDTEDELEFRSWYGTPVLQTEFVELEKSGWSMFTREMFLRFRDSLKRENPHAYTLQKYRRPGMNWKVYRDHISNRFSCTCMRMESFGIPCVHILSVCVSLDLVEIPKSLVLRRWSKAAKLEIHNQCVEQHTANPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLEIKYGLRPSTDDITTANDCGVKDPIRVRTKGTGRMSQGGGSASKTKRKCSTCGKLGHRRTRCPNGAGQAPTRNNESHGGRNKRKRSKVPVVVPDNCHAENAFQAGSDKRDQFSLADP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2344 535 PANTHER OS07G0283300 PROTEIN 80 310 - -
Amo11g2344 535 Pfam FAR1 DNA-binding domain 91 180 IPR004330 -
Amo11g2344 535 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 80 310 - -
Amo11g2344 535 MobiDBLite consensus disorder prediction 442 512 - -
Amo11g2344 535 ProSiteProfiles Zinc finger SWIM-type profile. 309 342 IPR007527 GO:0008270
Amo11g2344 535 SUPERFAMILY Retrovirus zinc finger-like domains 446 487 IPR036875 GO:0003676|GO:0008270
Amo11g2344 535 Pfam SWIM zinc finger 318 340 IPR007527 GO:0008270
Amo11g2344 535 SMART 26again6 317 344 IPR006564 GO:0008270
Amo11g2344 535 ProSiteProfiles Zinc finger CCHC-type profile. 465 482 IPR001878 GO:0003676|GO:0008270
Amo11g2344 535 MobiDBLite consensus disorder prediction 452 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2344 Amo-Chr11 125285558 125289445 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g2344 FAR1 3.9e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2344 - - aip:107611673 548.51