Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2317 ATGTTATCAAGAAAGTTCCTTACGAAAAATACCACAAGAAGAGGAACTATTGCACCTGCTGAGAATGACCGCCTCCAGACTCTCGTCTTCAAGTTCGGCGTGGCCAAGTCAATCCACCACGCCATGTTTTGTGATAATAGAAGATTTGTTGATTTCAGATGTGCTACTCCAGCTTCATCAAGATTTGCCAATAATAACAATAATAATGATGCACTAGAAGGAGACGTTGATTTCTCTATCGTAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTGTTATCCCAAGCCCCACGAAGATGGATAGAGCCTCTGTGGTGGGTGATGCCATTGAATATAATAAGGGAGCTGCTCAGAACGGTCTTAACCAGAATTCGACACTGCAGCTATCACGTGGCTTTTCTGTGGGAAAATCTCCTGGTTCTAAGCCTGGTGTTGCTGTGGTTGTCGAAAGAGTTAGGATACACGGGCTGTCAAGGTTTAGAAACCTGAGTAAATTCGCGCACTCCATGAAAGTGAAGGTGTTGCCTGCAGATCCAAATATTCGCATTCCAAACATAGAGATCTGTTTTCATAGGGCAATTTTGTGCGTCTTGTTCAGGAATGCATCTCTTGCTATAGGAATGTGCTCACAAGGCCAGTGGGAAAAAGTTACCAAGGGTTCTTGGGTTCGATCAATGTCTCCTTTTGACCACAAGCTCTTAGATATAAGGACTGCTAGCTCAACACTGGCATCCTTCTTAAGCAAATCGTTAGCATTTTATTATAGCAGCGCAATGGCAGTTGGGATCATTCTTGTGATACTTATGATTCTTTACCAGACTGAACATTGTGGATGGGGTGTAGAGGCAGCTGAAACCATCTACAAAGACGAATTCATAATTGAGTATATTGGAGAAGGGGTAGGATCAGAAAGTGAGCGAATGGTTTTAGGCGTGGCGTAG 963 0.4309 MLSRKFLTKNTTRRGTIAPAENDRLQTLVFKFGVAKSIHHAMFCDNRRFVDFRCATPASSRFANNNNNNDALEGDVDFSIVTEKQRREQLNGKYKILRSVIPSPTKMDRASVVGDAIEYNKGAAQNGLNQNSTLQLSRGFSVGKSPGSKPGVAVVVERVRIHGLSRFRNLSKFAHSMKVKVLPADPNIRIPNIEICFHRAILCVLFRNASLAIGMCSQGQWEKVTKGSWVRSMSPFDHKLLDIRTASSTLASFLSKSLAFYYSSAMAVGIILVILMILYQTEHCGWGVEAAETIYKDEFIIEYIGEGVGSESERMVLGVA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2317 320 Gene3D SET domain 275 316 IPR046341 -
Amo11g2317 320 Gene3D - 80 132 IPR036638 GO:0046983
Amo11g2317 320 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 249 281 - -
Amo11g2317 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Amo11g2317 320 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 128 249 - -
Amo11g2317 320 SUPERFAMILY SET domain 276 309 IPR046341 -
Amo11g2317 320 Pfam NEMP family 250 282 IPR019358 -
Amo11g2317 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 119 IPR036638 GO:0046983
Amo11g2317 320 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 128 249 - -
Amo11g2317 320 Pfam Helix-loop-helix DNA-binding domain 82 119 IPR011598 GO:0046983
Amo11g2317 320 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 249 281 - -
Amo11g2317 320 SMART finulus 80 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2317 Amo-Chr11 124471557 124477218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2317 80 122 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 53.488 1.57e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo11g2317 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2317 - - ahf:112748261 254.988