Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2310 ATGAGGAGTAATACCAAGAATAAAACTCTTAACAATAGAGGGAAACGGTGCCGTTCTCTTCCTCACTTACCCCCCTCCCCTGCGTGGTGCCCTAACCTAGAACACATCCCATCTCACCTCTCTCTTCTCTCACCTAACCTCAAGCTCGTTGCCGGCTCCTCAAGCTCGTCGCTGCCTCAAGCTCGCGTCGCCACCTCAAGTTCGCGTTGCTGCCTCAAGCTCGCGTCGCCGCCTCAAGCTCGTCGCAAGCCCTGTCGCGCTAAGCTCGTCTTCCTGCTTCGGCCATTAACGCTTCCTCCGCCAGGAATATTTAATTCAACACAGGACTATGCTTCTTCATTCGATGGAGATGGCCATGGCACGCATACAGCAGCAGGAAACCATGGGATTCCGGTGATTGTTACCGGGCATCACCTTGGGAATGCTAGTGGGATGGCTCCTTGTTCACGCCAGAGCTGGTGCGCTGCTCCGTTCTCTCTCGATCACTACTCCGCTGAGTCCGTTCAACTCCTGCGCCGCCTCCATTCTCCATTTGAAGCTGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCCGAAGCTATACCTCATGACACCCTTTCTCGGCTCTTATCTCATTATGGTGCTTCCTCTCTTCGTCCGTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTTGTAGATTTCAAAAATGAAATGTTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGAGTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGYAGATACAAAATCAGGATGTTTCCCTGTTGCRGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTATGCTTACCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGTTCGTCTGCAACACCACCACCATCCCCCTACCTCCGGGTACCTTTGTAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGCCAACAACAGAAAAGCCTAATAAGCGTGCCAGGCATGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTACGTTAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGGAAAAAAGATAAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTCGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGTAAGACCTTGA 1557 0.474 MRSNTKNKTLNNRGKRCRSLPHLPPSPAWCPNLEHIPSHLSLLSPNLKLVAGSSSSSLPQARVATSSSRCCLKLASPPQARRKPCRAKLVFLLRPLTLPPPGIFNSTQDYASSFDGDGHGTHTAAGNHGIPVIVTGHHLGNASGMAPCSRQSWCAAPFSLDHYSAESVQLLRRLHSPFEADSKPPAMDSPVTLLIKHLPEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEMLASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKESKASVVKDTTVTKAIDXDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPVRLQHHHHPPTSGYLCKPQSADLSSGESEMESSEEPTTEKPNKRARHETIIGPAIDKDVAHEDVGVKPATYVKNDDRSQDLQEPGKKINYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQVRP* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2310 518 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 185 466 - -
Amo11g2310 518 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 467 515 - -
Amo11g2310 518 MobiDBLite consensus disorder prediction 395 409 - -
Amo11g2310 518 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 265 IPR000504 GO:0003723
Amo11g2310 518 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 258 IPR000504 GO:0003723
Amo11g2310 518 SUPERFAMILY RNA-binding domain, RBD 189 266 IPR035979 GO:0003676
Amo11g2310 518 CDD RRM1_RBM40_like 192 263 IPR034147 GO:0005515
Amo11g2310 518 Gene3D Peptidase S8/S53 domain 105 150 IPR036852 GO:0004252|GO:0006508
Amo11g2310 518 MobiDBLite consensus disorder prediction 1 21 - -
Amo11g2310 518 MobiDBLite consensus disorder prediction 378 423 - -
Amo11g2310 518 SMART rrm1_1 192 261 IPR000504 GO:0003723
Amo11g2310 518 Gene3D - 165 280 IPR012677 -
Amo11g2310 518 PANTHER UNCHARACTERIZED 185 466 IPR045164 -
Amo11g2310 518 PANTHER UNCHARACTERIZED 467 515 IPR045164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2310 Amo-Chr11 124121987 124131776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2310 102 173 Subtilisin-like Serine Gene Family AT5G44530 53.947 3.40e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2310 K13157 - gmx:100818499 440.269