Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2302 CAGTTTGAATTTGAAGAGCCAGAAGGCCTTCCCACCCTCGAAGCTGGATCGAGTGACGCGGGTGTATGGGTTACAAATTGGATGATAGCTTGTTTTGAAGATGATCATTTTAACATAAAGTCCTTGCACACTGCAGTACAAGGTCCTGATAACTCAGCCCTTGAAGTACAAATAAGAATACAGAGGATGCATGAGTATGCTGAATATGGAAATGCTGCACATTGGCTGTATAAGGAAACTGGAAATCCTTTGTCATCAATAGACAGCATGGATGAACCTGAAATAGAAGAATCCTATTTCTCCAAGGATATAGAAGATGGGAATTCTTCAGATATTTTGTTAAGTAAATATAGGTCATTGAAGCCTGGACATCCAGCCCTCACGGTAGAAGGAAGTCACCTACTTGCTGATGATGAAAGAGAATTGTTAGTTGCTGTCATCTTTGGGCTTGCAGCTTCTGAAGCAGTAGCTGACAGAAGATCTTCTTTCCAGATTAAGCGATGGGAAGCTTATGCACAACAAATTGATGAGAAAGAGGAGGCCCGTGATGAAGATGATGATGGTGATGATGATGTTCAGTGGCAAACGAATACATCTATTTATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACTGCTGATATGGTCATGCTCTCGAAAAATGAACCAGAGAAGAAGAAGAAGACAGAAAGCAAGGGTTCTGAGAATGGTGACACTAAACTATGCAATTGTGGACAGGGAAGTGAAAGCATATTTAAAGAAAGGTGTTGTAGCGAAGGAATTGCAGTCACATATTGCTGGTTTGGAAAAGAAGCTACCAAGAGGAAGAATCACCTTGCTGCTGCAGTTGCTGGAGATGATGAGGGATCGCAGCTGTTATTGCTCAATGCTGTTGAGGAGTTCTGTTACAAGAAAGGTAGCAATGCGTTGAAGGAGGTTGCACTTATTCTGAAAGCCCTCTATGATGTTGATTTGGTGGAGGAAGAGCACGTCGTGTATTGGTATTCAAAGGGACTGAAGGGTGATAAGAAGGACTCTCAGATATRGAAGAATGCTCAACCATTCATTGATTGGCTTCAGAATGCTGAATCARAATCGGAGGAAGAATGA 1119 0.42 QFEFEEPEGLPTLEAGSSDAGVWVTNWMIACFEDDHFNIKSLHTAVQGPDNSALEVQIRIQRMHEYAEYGNAAHWLYKETGNPLSSIDSMDEPEIEESYFSKDIEDGNSSDILLSKYRSLKPGHPALTVEGSHLLADDERELLVAVIFGLAASEAVADRRSSFQIKRWEAYAQQIDEKEEARDEDDDGDDDVQWQTNTSIYAARQRIQEQLSAVTADMVMLSKNEPEKKKKTESKGSENGDTKLCNCGQGSESIFKERCCSEGIAVTYCWFGKEATKRKNHLAAAVAGDDEGSQLLLLNAVEEFCYKKGSNALKEVALILKALYDVDLVEEEHVVYWYSKGLKGDKKDSQIXKNAQPFIDWLQNAESXSEEE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2302 372 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 271 372 IPR045196 GO:0003743|GO:0006413
Amo11g2302 372 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 271 372 - -
Amo11g2302 372 MobiDBLite consensus disorder prediction 222 241 - -
Amo11g2302 372 CDD W2_eIF5 271 370 - -
Amo11g2302 372 Pfam eIF4-gamma/eIF5/eIF2-epsilon 294 372 IPR003307 GO:0005515
Amo11g2302 372 SMART 542_3 279 368 IPR003307 GO:0005515
Amo11g2302 372 Pfam Region found in RelA / SpoT proteins 34 81 IPR007685 GO:0015969
Amo11g2302 372 MobiDBLite consensus disorder prediction 222 238 - -
Amo11g2302 372 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 181 237 - -
Amo11g2302 372 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 181 237 IPR045196 GO:0003743|GO:0006413
Amo11g2302 372 Gene3D - 219 363 - -
Amo11g2302 372 SUPERFAMILY Nucleotidyltransferase 40 82 IPR043519 -
Amo11g2302 372 ProSiteProfiles W2 domain profile. 186 372 IPR003307 GO:0005515
Amo11g2302 372 SUPERFAMILY ARM repeat 273 366 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2302 Amo-Chr11 123834180 123836066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2302 194 365 Eukaryotic Initiation Factors Gene Family AT1G77840 42.574 2.14e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2302 - - ahf:112724043 223.787