Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2272 ATGGATCTTAGTTTTTGTTTCTCCTGCTTCTTGTTTGTTTGTTATTCAATTTCTCTTCTCTTGGTCTTAGTCAAAGGAATCATTAGTAGTATTCTTAAACACTTTGCATTTGGGAGTTCAAAGAAGGACTTATACTATCATCTCCTTCCATCAGGTGACAAGAACATGAACATGATGATGATGCAAAACTTAATTGAGAGACTGAGGCCTCTTGTTGGATTGAACGGTTGGGACTACTGTGTATACTGGAAACTAAGTGAAGATCAAAGGTTTGTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGATCAAAACAATAATGTTGGGGAAGACATTCACATTTTCCCATGTAGGGATACCATGTTCTCACATCCCAGAACTAACCATTGTTATCTTCTTTCTCAGCTTCCTACTTCCATTTCCATCATAGATTCTGGGTATGAAACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTACCTGAAGATCATCAAGTAATTGATTTTGTGACAGCACAATGCATTGTGTTGGTAGAGCAAGAAGCAGCAAACAACTCAACAAGTTTCAACATGCAATCAAATGTTGTTGGAGATGATAATAATAATAATCATAATAATAATAATAATGAAAATCAAGTGATGATGAACAACAACAACAACAACAACAATAATCAGTTTGTTCTCACAACTGCACCAGAAACTTCACCACATGATGAAATCCCCATCACTCTATGCAGTTCTCCACTCAACTTCATGCAACAGTTCAGAACAATGAATAAGAACAACGATAACAACAATAACAACAATGCATTTTCTGAAGAATATCAAGGTTCAATATTCCTCCATGAAAACCAAAACAACAATAACCAGCCAATGAAAGCAGCAGCAATGGAGGAAGAAGAAGAAGAAGAGCAGCAAGTGGGGACAAAGGAGAATAACAACAACAACAAAAATGAAGGAGGAGTTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAACGAAGAAGAGGAAGATGGAAAATACAGAAGGAGGAATGGAAAAGGGAACCAYTCAAAGAACCTTGTTGCMGAAAGAAAGAGAAGGAAGAAACTGAATGACAGGCTGTACAATCTTCGTTCATTGGTTCCAAGAATATCCAAGCTTGATAGAGCTTCCATTCTTGGCGATGCAATTGAGTTTGTTAAGGATTTGCAAAAGCAGGTCAAGGATCTTCAAGATGAACTTGAGGACAATAACAACAATTCTGACACTACTGCTGTTGATCATCATGATAGTAGCAACCAGTTTCTTGATCATTTCGGAGCATCCTATGTTGTCCCAAATCACAAGCATATGCAGCAAGATGCAGTGGATGCCACTACTCTTACCATGGACAAGCAGCACTCCCAACAAATGGAGCCTCAAGTGGAAGTGGCAGTGATAGATGGGAAGGAGTACTTTGTGAAGGTATTCTGTGAACACAGAGCAGGTGGATTTGTGAAATTGATGGAGGCACTCAACACCTTAGGCATGGATGTTGTACATGCCACTGTCACTAGCCACAAAGGCCTTGTCTCTAATGTCTTCAAAGTTGAGAAAAAGGATAGTGATATGGTGGAGGCTGAYGATGTGAGAGACTCATTGCTAGAGCTTACAAGGAACCCATCATGTAGGGTMTGGAGTAATAATAATACAAAGAARAATAATCCCACATCGGAGAATTCCAATGGTGTTGGTGTGGGAAGGGATCATCATCATCATCATCATCATCACATGCCCGCATATCATCCCCATCCATTTCATACTTAA 1836 0.3954 MDLSFCFSCFLFVCYSISLLLVLVKGIISSILKHFAFGSSKKDLYYHLLPSGDKNMNMMMMQNLIERLRPLVGLNGWDYCVYWKLSEDQRFVEWLGCCCGGTDQNNNVGEDIHIFPCRDTMFSHPRTNHCYLLSQLPTSISIIDSGYETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTAQCIVLVEQEAANNSTSFNMQSNVVGDDNNNNHNNNNNENQVMMNNNNNNNNNQFVLTTAPETSPHDEIPITLCSSPLNFMQQFRTMNKNNDNNNNNNAFSEEYQGSIFLHENQNNNNQPMKAAAMEEEEEEEQQVGTKENNNNNKNEGGVVGVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNHSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNSDTTAVDHHDSSNQFLDHFGASYVVPNHKHMQQDAVDATTLTMDKQHSQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEADDVRDSLLELTRNPSCRVWSNNNTKKNNPTSENSNGVGVGRDHHHHHHHHMPAYHPHPFHT* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2272 611 CDD ACT_UUR-ACR-like 497 560 - -
Amo11g2272 611 CDD bHLH_AtAMS_like 367 433 - -
Amo11g2272 611 MobiDBLite consensus disorder prediction 568 587 - -
Amo11g2272 611 Gene3D - 351 430 IPR036638 GO:0046983
Amo11g2272 611 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 146 569 - -
Amo11g2272 611 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 146 569 - -
Amo11g2272 611 MobiDBLite consensus disorder prediction 568 611 - -
Amo11g2272 611 MobiDBLite consensus disorder prediction 591 611 - -
Amo11g2272 611 SMART finulus 370 419 IPR011598 GO:0046983
Amo11g2272 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 413 IPR011598 GO:0046983
Amo11g2272 611 MobiDBLite consensus disorder prediction 209 236 - -
Amo11g2272 611 MobiDBLite consensus disorder prediction 304 375 - -
Amo11g2272 611 Pfam Helix-loop-helix DNA-binding domain 371 414 IPR011598 GO:0046983
Amo11g2272 611 Coils Coil 403 430 - -
Amo11g2272 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 428 IPR036638 GO:0046983
Amo11g2272 611 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2272 Amo-Chr11 123065477 123069358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2272 61 598 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.562 2.11e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo11g2272 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2272 - - aip:107616200 786.949