Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2271 ATGGACTCTGACGAGGATATGCATGACACCAATGACCTTGAATCCCTTGACGACGATTACTATAGTGGCGGCCCGGAGGATGCTGCCATGAATTACTACAGCGACTACGATCAAGATGCCGATGATTACTTTAATGAAGCTGATGATCCTAAAAGGCTCGAGTCTCGTCACCCTGAGCAAAATTTTACCATCTTAAAGGAATTAAATATCCAACAAAGACAAGAGGAGGACATCACTATGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAAGTCAAGTCGGCAAAGCAGTTGGCTTGTTGGATAAACCAATCATTAGGCATGCTAATGCTAGAGAGAGATGGCTTCTTGTGGTCATCCTTTTTGTCTCTCGTGTTGGATATATCAGCACATCCATCAGTGATGGCCCTGGATGTTTGATGCTGAGATGTCCTAATTCCACATGTGGTGTTACTGTTGGGCAAGATATGATTAATCAAGTAGCATCCAAAGAAGATAAACATAAGTATTCTTACTACCTTCTTAGGTCATATATTGAAGACAATAAGAAATTGAAATCTACATGTCTATGA 579 0.4093 MDSDEDMHDTNDLESLDDDYYSGGPEDAAMNYYSDYDQDADDYFNEADDPKRLESRHPEQNFTILKELNIQQRQEEDITMSVSKVHDAWFADESQVGKAVGLLDKPIIRHANARERWLLVVILFVSRVGYISTSISDGPGCLMLRCPNSTCGVTVGQDMINQVASKEDKHKYSYYLLRSYIEDNKKLKSTCL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2271 192 MobiDBLite consensus disorder prediction 1 32 - -
Amo11g2271 192 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 128 188 - -
Amo11g2271 192 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 79 - -
Amo11g2271 192 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 80 116 IPR031127 GO:0004842|GO:0016567
Amo11g2271 192 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 80 116 - -
Amo11g2271 192 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 128 188 IPR031127 GO:0004842|GO:0016567
Amo11g2271 192 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 79 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2271 Amo-Chr11 123017284 123018890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2271 17 188 ARIADNE family AT1G65430 39.091 2.17e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2271 K11968 - gmx:100810427 243.047