Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2267 ATGGAAAAAGTGGCATCATTGGTGTTGAAGGAAGAGGAGCAGATGGATTTGCCACCGGGGTTTCGGTTTCACCCAACTGATGAAGAGCTCATAACCCATTACCTATACAAGAAAGTTATTGACACCAACTTCGCCGCRAGAGCCATTGGCGAAGTCGACCTTAACCGCTGCGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTCTTCTGCGTGAGGGATAGGAAGTATCCGACCGGGTTGAGGACAAACCGGGCCACGGAGTCTGGGTACTGGAAGGCAACCGGGAAAGACAAGGAGATTTTTCGAGGCAAATCKCTCGTCGGAATGAAGAAAACGCTTGTCTTCTACAAAGGAAGAGCACCWAAAGGAGAGAAAACAAACTGGGTCATGCACGAGTTCAGGCTGGAGGGAAAATTCTCCATCCATAACCTCCCAAAAACCGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCGGAAGAGTTCAGCTGGCAAGAAGGTTCACATCTCTGGAATCATGAGGCTCGACACTTTCCGAACYGAATTGGATTCTTCCGGTCTACCTCCCTTGACGGAGACCTCGCCCTCTTTCGACACCATCCATGACGAATCGCCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAAACCAAGCCGCAGGCGGAAGCGGAGGAGGAGGAGGAGTCTTTGGTGGTTCCTTCCCCAACAACTCCTCCTCTTCTGTTYCCGCCTAYGCGGTTTCTTCCAACATTCTCCCAAGGATGCCGATTTGCGGCGGTTCCTTGTACTCTACTCAACATCAAGATCAGAGTATCCTGAGGGCGTTGTATGAATCGAACGAAAGGGAAATGATCAGTGTGTCACAGGAAACAGGCCTCACTACTGAGATGAACGTGGAAACCAATTYCGTGGTGTCCAATTTTGATWTAGGGAGGGCTCACTTTGAGAGYTTGTGGAATTACTGA 993 0.4935 MEKVASLVLKEEEQMDLPPGFRFHPTDEELITHYLYKKVIDTNFAARAIGEVDLNRCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFSIHNLPKTAKNEWVICRVFRKSSAGKKVHISGIMRLDTFRTELDSSGLPPLTETSPSFDTIHDESPYVPCFSNPIDVPRNQAAGGSGGGGGVFGGSFPNNSSSSVXAYAVSSNILPRMPICGGSLYSTQHQDQSILRALYESNEREMISVSQETGLTTEMNVETNXVVSNFDXGRAHFESLWNY* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2267 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 303 - -
Amo11g2267 330 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Amo11g2267 330 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Amo11g2267 330 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 303 - -
Amo11g2267 330 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Amo11g2267 330 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2267 Amo-Chr11 122979235 122980391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2267 15 325 NAC Transcription Factor Family AT5G07680 58.861 5.65e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo11g2267 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2267 - - gmx:100170719 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2267 11 122979235 122980391 Amo11g2267 11 122979235 122980391 ECH