Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2252 ATGAGCGCACCAATCATTACATACTCAACAGGAGTAAGACATCATAGACACTCGGTGAACGAAAAAAAAGAAGAATGGCAATGGCATGACCGATGCACGATACATGAAAGGATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAGAGCACCAGCAATCGCCAAGTGACTTATTCAAAGCGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAATTGTCAATACTATGTGATATAGATATTGTTCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGYAATATTGAGGAAGTCATTGCAAAATTTGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGTAAGACATTCTTTTCATCTCACATTTGTCTTTTCTATATATTGTGCATTTGATGCATCAGGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACTGTGGAGGAATTAACTCATCAAGTAAGGCTTCTACAAACGCAGCTAACAGATGTACATCAGAGACTGAGGAAAATTTGGGAAAGCACCAAATAATGTCTCTTGAATGTGCCAATCAGGATGGAATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCATTGTCTTGGCTTTTGAATAACGATAACCATCAGTTGATGTTGCCGAGCGAACCGAAATATCTGCAATATAGCGATAATACCAATAGAGAAGCTGAGCGCTCAACTGATGTTTCGCTCCCTGGATATTCCAGTTACATTGCCAATAATGGCAAACTTGACAGCTCTCCCCAAGTCAATACCATAGGTCAGGCAGGCAGTGGCTTGAATGAGTTGAACGGCACTGCTTGCTTAAATATACAACGTTGTGAGCAATTTGCATACCCTCCTCCTCCTCCTCCTCCTCCAGATAATGAGGAAGTGAAACATCGCACGACAATGTATAATGAGAATGGCCATGATAAACTAAATACTTCAGATTACCAAGTTCATAATGGCTTTGATTTGCCAAGATCACTGTTTGAAAACGGACACCAGTTCTGGAATTCTGCTCCTGGGCCYTGTGGGGTTGCCATGTATAACGAGAATGGCTACCATAGGGTATGCAGTCCTTTTGATTTTCACCATGTTCCAGTTTTGGCTTTTGTTCTTCGTAATCGATTGACTCTGCCACCCCTACTAACTGATTGGCTTCTAACATTTTTATCCTTTGATGATGTTAACTTTGAAGGACTCCAGAAACCAGATTAG 1305 0.4054 MSAPIITYSTGVRHHRHSVNEKKEEWQWHDRCTIHERMGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEVRHSFHLTFVFSIYCAFDASGTKENLQEIGSRCKNTRFLGFKQSNCGGINSSSKASTNAANRCTSETEENLGKHQIMSLECANQDGMTLPLMMAGLQENQPLSWLLNNDNHQLMLPSEPKYLQYSDNTNREAERSTDVSLPGYSSYIANNGKLDSSPQVNTIGQAGSGLNELNGTACLNIQRCEQFAYPPPPPPPPDNEEVKHRTTMYNENGHDKLNTSDYQVHNGFDLPRSLFENGHQFWNSAPGPCGVAMYNENGYHRVCSPFDFHHVPVLAFVLRNRLTLPPLLTDWLLTFLSFDDVNFEGLQKPD* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2252 434 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 ProSiteProfiles MADS-box domain profile. 38 90 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 92 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 Gene3D - 51 130 IPR036879 GO:0003677|GO:0046983
Amo11g2252 434 CDD MADS_SRF_like 39 119 IPR033897 GO:0000981|GO:0000987|GO:0045944
Amo11g2252 434 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 38 370 - -
Amo11g2252 434 SUPERFAMILY SRF-like 38 121 IPR036879 GO:0003677|GO:0046983
Amo11g2252 434 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Amo11g2252 434 PANTHER MADS BOX PROTEIN 38 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2252 Amo-Chr11 122619975 122624718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2252 38 342 Type I MADS-box Gene Family AT2G03060 37.082 8.17e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo11g2252 SRF-TF 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2252 - - adu:107468091 540.806