Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2251 ATGGGATTTTTGGGAGTTGTGTTGATGGGGTTTATTTCATTAGTAGGAATAGGTGTTCATGGGAATGATGCTAATGGTAATAGTTGGTTGGATGCCCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGCCACAATGGGTGGAGCTTGTGGATATGGAAACCTGATTAGGCAAGGATATGGGACTGAAACAGCCGCTTTGAGCAGTGCATTGTTCAACAATGGCATGAGCTGTGGGGCATGTTTTGAGGTGAAGTGTGTGAGTGATCAAAGMTGGTGCCTCCCTGGCTCAGTTGTGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCCCTCCCAAGCGATAACGGCGGTTGGTGCAACCCTCCCCTTCAACACTTTGATCTCTCTCAACCTGTCTTCCAACAAATTGCTCAATACAGAGCTGGCATAGTCTCTGTAGCTTATAGAAGGGTCCCATGCCAAAGGAAAGGAGGCATCAGATTCACCATCAATGGCCATTCTTACTTCAACCTAGTCCTAATCACCAATGTTGGGGGTGCGGGCGACGTTACCGCGGTTTCCATCAAAGGCTCAAGAACCGGTTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTCACCGCCAGCGACGGCCGCACCGTTGTCTCCAGTGATGTTGCCCCTCCTGGTTGGTCCTTTGGCCAGACCTTCACAGGCCAACAATTCCCTTAG 759 0.5007 MGFLGVVLMGFISLVGIGVHGNDANGNSWLDAHATFYGGGDASATMGGACGYGNLIRQGYGTETAALSSALFNNGMSCGACFEVKCVSDQXWCLPGSVVVTATNFCPPNNALPSDNGGWCNPPLQHFDLSQPVFQQIAQYRAGIVSVAYRRVPCQRKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTASDGRTVVSSDVAPPGWSFGQTFTGQQFP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2251 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Amo11g2251 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Amo11g2251 252 PANTHER EXPANSIN-A15 11 251 IPR002963 GO:0009664
Amo11g2251 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Amo11g2251 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Amo11g2251 252 PANTHER EXPANSIN 11 251 - -
Amo11g2251 252 Gene3D - 158 251 IPR036749 -
Amo11g2251 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Amo11g2251 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Amo11g2251 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Amo11g2251 252 Gene3D - 16 155 IPR036908 -
Amo11g2251 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Amo11g2251 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Amo11g2251 252 SMART dpbb_1 64 149 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2251 Amo-Chr11 122616769 122618802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2251 1 251 Expansin Gene Family AT2G03090 76.494 1.21e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2251 - K20628 gmx:100816718 439.884