Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2248 TTGGAGTGTTACCCTTCACTTCCTTTTTATGAAACTCTTTCCATCGAGCCAATTTCAACTATTAAAGACTATGACTTTTATGATATCAAGAAAGGGTTTTCTGTCTGGAACGAAGTGGATGTCGGCTTTGATTGTTCGGAAAAAATTTCATCATCATCATCATCACTTTCCAACAATAACAATGAAGAAAATAAGAGCATCCGGAGGGTTATGAATAAACGAGTTTGTAGAGAAGAGAGAAGTAGCAACAGTACGAAAATGTTATCTAGGAAGATGATATCGGAGTATTTCTACATGCCAATAACTCAAGCAGCGAAGGAACTTGATGTGGGCTTAACTCTTTTAAAGAAGAGATGCAGAGAGTTAGGGATTCGAAGGTGGCCCCATCGAAAACTTATGAGCCTTCAAACCCTCATCACTAATGTTCAGGAGCTAGGGAAGGAAGAGGGGAGAGAGAGTGAAGAGAAGCTAAGGAATGCAATTGAGATATTGGAGAAGGAAAAGAAGCTTCTGGAAGAAATGCCTGATATGCAACTTGAGGACAATACCAAAAGGCTTAGGCAAGCATGCTTCAAGGCTAATTACAAGAAGAGGAAGCTCATGATGGGTTGTACTTCTTCAAATTCATCCGTGGAATCTTCGTCTTCATCATCATATCATATTATTGGACATAATGCATTAAGAACAGCTAGTCAGAGTAACACAATGGGTGGTGTTGAATTTATTAGCTTTGATGATGATGAAGATCAAGAACGAGACATCAAATCTGTGTTGTCTTTGCCTTCTTTGTCCCACAACATTCAAATGTGTTCTAGCTATATGTTTAATCACCCAAGTGATGCTTCCTTTTCCTCCGCCATAAGATGA 867 0.3899 LECYPSLPFYETLSIEPISTIKDYDFYDIKKGFSVWNEVDVGFDCSEKISSSSSSLSNNNNEENKSIRRVMNKRVCREERSSNSTKMLSRKMISEYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLITNVQELGKEEGRESEEKLRNAIEILEKEKKLLEEMPDMQLEDNTKRLRQACFKANYKKRKLMMGCTSSNSSVESSSSSSYHIIGHNALRTASQSNTMGGVEFISFDDDEDQERDIKSVLSLPSLSHNIQMCSSYMFNHPSDASFSSAIR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2248 288 Coils Coil 147 174 - -
Amo11g2248 288 ProSiteProfiles RWP-RK domain profile. 71 155 IPR003035 -
Amo11g2248 288 PANTHER PROTEIN RKD1-RELATED 15 215 - -
Amo11g2248 288 Pfam RWP-RK domain 88 135 IPR003035 -
Amo11g2248 288 PANTHER PROTEIN RKD4 15 215 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2248 Amo-Chr11 122576324 122577912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2248 74 199 AtRKD Transcription Factor Family AT1G18790 69.531 3.43e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo11g2248 RWP-RK 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2248 - - adu:107470725 480.33