Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2182 ATGGGTCGGAGCTTCAAAGTGGAACACAATTGTGGACCGCTAAATGGAGACCCCTTTATTAAAGTTGGTGAAGTTGATGAAACAGGCCTTCAGCCCTTGTTGGAAAGTTTGGCCAGCTGCCCCAAGCATGGTCTGCACAATCCATTTAAGGCTCCGGAGAGATATCTTATGTTTGGAGATATATCTGCTAAGGCAGCTCACATGCTATCACTCCCTAAGGTTTCAGATTTCTTTGCAAGGCTAATACAGAGAGTTTCTCCCAAGAGTTATCATCAGGCCTGTGCAGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTCTGCGGTGATCAGGTTCGCTTCCTGGCAAGGTCTTTTGGGGTGCCTGGAAATCATCTTGGGCAGCAAAGTCACGGTTTCCGTTGGCCATATGGTCCGGTGGCTATTATTACTCCTTTCAATTTTCCATTAGAGATTCCAGTCCTTCAACTGATGGGTGCACTTTATATGGGCAACAAGCCAGTTCTTAAAGTTGATAGCAAGGTAAGCATTGTCATGGAGCAAATGTTGCGTCTGCTTCACACATGTGGTTTACCTGTAGAAGACGTAGACTTCATAAATTGTGACGGGAAGACAATGAACAAGCTGTTGCAGGAGGCAAATCCAAGAATGACCCTTTTCACTGGTAGTTCAAGAGTGGCAGAGAAATTGGCTGTTGATTTGAAGGGCCGGATTAAATTGGAAGATGCTGGATTTGATTGGAAAATACTGGGCCCTGATGTTGACCAGGAAGATTATGTTGCATGGGTCTGTGACCAGGATGCTTATGCATGCAGTGGTCAGAAGTGCTCAGCACAATCATTATTATTTATGCATGAGAACTGGGCTTCTACTTCCTTGGTATCCAAATTGAAAGGTCTTGCTGAGAGAAGAAAGCTAGAGGACTTGACAATTGGTCCAGTTCTCACTTTTACAACTGAATCAATGATGGATCACATGAAACAATTACTTGAGATACCAGGTTCAAAGCTGCTCTTTGGGGGCAAGCCTTTAGAGGGTCATTCTATTCCACCTATTTACGGTGCTATTAAGCCCACTGCTATTTATGTTCCCCTTGAGGAAATTGTGAAGGACAAGAATTATGAGCTTGTGACAAAAGAAATTTTTGGACCTTTCCAGATAATTACTGACTACAAAAGCAGTCAACTACCAACCGTGTTGGATACATTGGAAAAAATGCATGCACATTTAACTGCTGCTGTAGTTTCAAATGATCCTCTCTTTTTACAGGAAGTCATTGGTAGATCAGTGAATGGTACAACTTATGCTGGTCTAAGAGCAAGGACTACTGGAGCTCCACAAAACCATTGGTTTGGACCTTCTGGAGATCCTAGGGGTGCTGGAATCGGAACACCAGAAGCTATAAAACTAGTATGGTCTTGCCACAGAGAAGTTATATATGATTATGGTCCAGTACCAAACCGTTGGGAAATTCCTCCATCAACATGA 1488 0.4294 MGRSFKVEHNCGPLNGDPFIKVGEVDETGLQPLLESLASCPKHGLHNPFKAPERYLMFGDISAKAAHMLSLPKVSDFFARLIQRVSPKSYHQACAEVYVTQKFLENFCGDQVRFLARSFGVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHTCGLPVEDVDFINCDGKTMNKLLQEANPRMTLFTGSSRVAEKLAVDLKGRIKLEDAGFDWKILGPDVDQEDYVAWVCDQDAYACSGQKCSAQSLLFMHENWASTSLVSKLKGLAERRKLEDLTIGPVLTFTTESMMDHMKQLLEIPGSKLLFGGKPLEGHSIPPIYGAIKPTAIYVPLEEIVKDKNYELVTKEIFGPFQIITDYKSSQLPTVLDTLEKMHAHLTAAVVSNDPLFLQEVIGRSVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPNRWEIPPST* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2182 495 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 8 494 IPR044638 GO:0004029
Amo11g2182 495 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 269 280 IPR016160 GO:0016491
Amo11g2182 495 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 8 494 - -
Amo11g2182 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 51 245 IPR016162 GO:0016491
Amo11g2182 495 Pfam Aldehyde dehydrogenase family 73 437 IPR015590 GO:0016491
Amo11g2182 495 SUPERFAMILY ALDH-like 12 461 IPR016161 GO:0016491
Amo11g2182 495 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 246 436 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2182 Amo-Chr11 120045553 120052611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2182 13 495 Aldehyde Dehydrogenase Gene Family AT5G62530 83.678 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2182 K00294 - gmx:100806579 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2182 11 120045553 120052611 Amo11g2182 11 120045553 120052611 ECH
Amo01g4201 01 117546410 117553532 Amo11g2182 11 120045553 120052611 hybridization