Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2177 ATGGAAGGTAAAATGCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGCTGAATTCGACCAAGTATGGATGGAGCGATCTATAGAAGCCAAAAAAGCAGCTCGCAAGGCTTTCAAGCCAAACCCTGAGGCAGTCACTGATGAATTCAATCAACATGTCAACAAGGTCCTTAAAGGTTCCAATAAAACGAGAAGGGGTTTATCCGCCAAATACAAAGGTCCATGTATGGCTACAAATCCCATTGACCGTTGCTGGAGATGTGACCCCAATTGGGAGAAAAACCGCCAACGGTTAGCAGACTGTGCTATTGGTTTCGGCCATGGCACGACGGGCGGCAAAGGTGGCAAAATCTACGTTGTCAATGATCCCTCAGATCATGATCTCCTCAACCCGAAACCTGGGACTCTGCGATTCGCAGTGATTCAGAAGGAGCCATTGTGGATCATTTTTAAACATGACATGACCATCAAGCTTAGTAGTGAGCTTATAGTCACTAGTCACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTGCCAATGGTGCCCAAATGACGCTACAGTTTGTGAAGAACATAATCGTTCATGGACTGCATATTCACGGCATCAGGAAACATGCCGGCGGCATGATAAGAGACTCGGTCGACCACTTTGGAATCCGCACTGAGAGCGATGGGGATGGGCTTTCATTGTTTGGAGCTACAAACATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATATCCAACTGCCACATGACTCGCCATAATGATGTTATATTACTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATATTGTCAACAATGACTACACTCACTGGCTTATGTATGCCGTCGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGTTACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGTGACTTAATGCTGAATGGAGCCTTCTTTGTTGAGTCTGGGACGAAGGTTACAAATTTTCCCAAATCAGGAGGTATTACTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGTAGTACACAAGCCATGCTGA 1269 0.4523 MEGKMLILVLLCVFPTLNANIAEFDQVWMERSIEAKKAARKAFKPNPEAVTDEFNQHVNKVLKGSNKTRRGLSAKYKGPCMATNPIDRCWRCDPNWEKNRQRLADCAIGFGHGTTGGKGGKIYVVNDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELIVTSHKTIDARGANVHIANGAQMTLQFVKNIIVHGLHIHGIRKHAGGMIRDSVDHFGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVILLGASDAYSGDQIMQVTLAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIVTKRDYAPQSVWKNWNWRSEGDLMLNGAFFVESGTKVTNFPKSGGITAKPGSFTSSLTRFAGPLKCVVHKPC* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2177 422 Pfam Pectate lyase 165 349 IPR002022 -
Amo11g2177 422 SMART amb_all 158 355 IPR002022 -
Amo11g2177 422 PANTHER PECTATE LYASE 18-RELATED 6 422 IPR045032 GO:0030570
Amo11g2177 422 SUPERFAMILY Pectin lyase-like 84 413 IPR011050 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Amo11g2177 422 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Amo11g2177 422 PANTHER PECTATE LYASE 6 422 - -
Amo11g2177 422 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Amo11g2177 422 Gene3D - 83 415 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2177 Amo-Chr11 119743220 119745671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2177 5 422 Polysaccharide Lyase AT3G01270 53.004 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2177 K01728 - gmx:100801864 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2177 11 119743220 119745671 Amo20g3300 20 140887564 140891630 ECH
Amo13g4802 13 146257634 146273428 Amo11g2177 11 119743220 119745671 ECH
Amo11g2177 11 119743220 119745671 Amo11g2177 11 119743220 119745671 ECH