Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2127 ATGGGACACAAGAAGCGAAATTCGGCTCCGCGGTCCAAACATTCGCCGGCGACTTCTCCGGCGGCGCAATTCGCCGTCGTCGGCGACGGTACCGCATCGCCGGAGAAACAAGACTCAGGCAATGTTCCCGATCACAACAGCAAAACCAATAACGGCGTTCAGAACCCTAACGGGATCGAGTTTCCTCCTCCGCCACCGCCGCCGCCTCCTCCGCCTCAATCCGATGGTCCTTCCTCCGATTACACCGCGATCAAGCTCGAGTGTGAGCGTGCCCTAACGGCGTTCCGGCGCGGGAACCACAACAGAGCACTGAAGCTCATGAAGGAGCTATGCGGGAAGCAAGAGAACGCTGCTCACTCCGCATTCGCGCACCGCGTCCAGGGATTCGTCGCCTTTAAGGTCGCCGGAATCTTGAACGACCCTACCGCGAAGCAACGGCACGTGAAGAACGCCGTCGATTCGGCTCGCAAGGCCGTCGAGCTGTGCCCTAATTCGGTCGAGTACGCGCACTTCTACGCCAATTTGATGCTCGAGGTCGCGAACGACGGGAAGGATTATGAGGAGGTAGTGCAGGAGTGCGAGAGGGCGCTGGCGATAGAGAACCCTAGCGATCCAGGGAAGGAGAGCTTCCAGGATGAGAGTGATCAGAAGTTGTCGACTCCCGAGGCACGTGTTTCGCATGTGCAAAACGAGCTGCGGCAGCTGATTCAGAAGTCGAACATCGCTTCGCTGTCGAGCTGGGTGAAGAATCTGAGCAACGGCGAGGAGAGATTTCGGCTGATTCCGATTAGGAGGCCGACGGAGGACCCTATGGAGCTGAGACTGGTTCAGACTCGAAGGCCTAACGAGATCAAGAAAGTGACGAAGACGCCGGAAGAGAGGAGGAAGGAGATTGAAGTGAGAGTCGCCGCTGCGAGGCTGTTGCAGCAGAAGTCTGAGTCGCCCCAATCTCCGAACGAAGTAGATAAGGATGAGAGGGGGTTGGATTCATCTTCAGCGGCTGGTCAGAGTAGGAGGAGGCATGTGAATTCGAAGAAGAATGGGTCTACTGCTGAGAGGAGGAAATGGGTGCAATCTTACTGGAGTTCGATGAGTGTGGAAATGAAGAAGGACATGCTTAGGGTTAGGGTTTCTGATCTTAGGTCACACTTTGGGTCTTCGAAGGATACTTTGCCTATCGATCTTTTGGCGGAGGCTGTGTCGTATGCTGAGGCCAATAAGACATGGAAATTCTGGGTTTGCTGCCATTGTGATGAGAAATTTAACGATGACGAGTCTCACAGCCAACATCTTGCGCAGGCGCACATGGGTATGCTCTCGCCGAATTTGCAGGGGCATCTGCCCCATAATGTTGACAGTGAGTGGATTGATATGATTCATAATTGTTCTTGGAAGCCTCTGGATGTTTCTGCTGCAGTTAAAATGCTTGAGAGTAGAATGAAATTCAAAGGTTCAACATTAGTTGAGGATTCGTACTTCGATCATCATACACAGGACTACTATGACTGTATTAACGATGCAACTGATCCTTACCATGAGAAAGAAGGTTTGGGATACAGTCTTCATAACTGTACAACAGAAAGCAATAACTATTGTAAAGCTGTTGCAAGTAATGTGAGAGAAGGCGTTGAAAACCAATTATCTATGTCGCATCCTTTCGCTGATAGTTGGCCAGTATCTGATGATTCTGAGCGCGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGATGCTTATTAAGCATAAATATCTTGCTGCTAGTCACCTTAGCAAGGTTATACAATTTACTATGGGTGAGATTCAGGGTCTTGCTGCTGGTTCTCAATTTCTAAATCATGGTGTCGATCAAACGCCAATGTGCATATGCTTTCTGGGGGCTTCACAGCTTAAGAAAATTCTCCAATTTCTTCAAGAGCTATCTCATGCATGCGGATTGGGTAGATATGGTGATAAAGGTAATGGTCTCATGAATGAGTTTCATGATATCAATCAAGGTCCTGAGATCAAAGAGAATATTGTTCTCAATAGAGATGCATCATGCCTCCTTCTGGATGAGTGTTTACTGGTTACACAAGTCACTTTTGATGCTGCTCAGGGGACTGTATTGGATAATATGACTGCCCAAAGTTCTCATGATGGTATTTCAAGCGATAATGATGATTTTCTATCCTGGATATATTCAGGTTCAGCTATCGGGGATCAATTGACATCATGGATGCGAACCAAAGAAGATAATAAACACCAAGGTACAGAAATTATCAAGATGCTTGATAAGGAGTTTTATCAACTACAGACCCTATGTGAGAAGAAGTCTGACCGAATGAGTTATGAAGAAGCACTGCAGACAGTAGAGGATCTTTGTCTTGAAGAGGGAAAGAAGAGGGAAATTGTTGGTGACTTTGTCCAGCAAAGCTATGAGTCTGTCTTAAGAAAACGAAGAGAAGAGCTCATTGAAAGTGAGAATGATGTGATGAATGTCGGCAATAGGTTTGAGTTGGATGCCATATCAAATGTTTTGCAAGAAGCAGAATCAATGAATGTTAATCAATTTGGATATGAAGAAACTTATGCTGGTGTGACTGCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGAAGAATGGAGAATGAAAGACTACTTGCATCAAATGGATGGTTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTTGTCTATAGAGCTTAGCAAAATTGATGCTCGAATCATTAGAAATATTGCTGAGATGCAACAATTGGAACTCAAGCTTGGGCCTCTTTCCGCTTATGATTATCGGGCTATATTATTGCCTCTAGTGAAGTCATACCTAAGGGCACGTTTAGAAGAATTTGCCGAGAAGGATGCAGTAGAGAAGTCTGATGCTGCAAGGGAAGCATTCTTGGCTGAACTTGCACGTGATGCTAAGAAGGCTAAAGGGGGAAGTGAGAACACAAGAAATGTGGATAAGACCAAAGATAAGAAGAAGACTAAAGATCACAGAAAAACAAAAGATCTGAAGGCTTCAAGTGGTCATGAGGAGCTATTGCTGCAAGCTAGCAGTCCTGATTCCAATACTGTTGCACCTGATAGTTACTTTCAAGATCCTGAGCTTGTTTCCATGAATGATAATTACTTGGAACAACAGGAAGAGGAATATAGACGGAAAATAGAGCTAGAAGAGGAGGAAAAAAAGCTTGAGGAAACTTTAGAATTTCAGCGTAGGATAGAAAATGAAGCCAAACAAAAACACCTTGCCGAATTACAAAAGAAATCGTCCGGGATATGTTTAGAGGAAGTTGCGGACAAAATTCAGGATGCTCAGTTGAAGACAGTTGCTGATGGGACAGATGTGCATGATCATGTAAAACTGCCTATACAGGAGCAGTCAGCTGATGAGAATTGCTGTCCTAGTGAAGTGGATAGTGTGATAGTCACCACTAAAAATGGTTCTTTGGTGCCAAATAAATATTCAGTTGATTCAGCTGATCAAAAGATATTGCATCAGCCAACTGTTAAACAAGCAGGTATACCTAATGGAGTTGTTCCAGAGAATGGTCATCAGTTGCCTGATCGTCGTGCAGGGAAAAAGCATAAACGGCATAGGAATTCTTCCAAAATGGTTGATGGAAAATTGGAATCTGTCTCATTGGAAAAGAATATTGAGGATGCACATACTGACAGACATTCAAGAGAGCATGTTAAATTCCATAATGATCAAGATGCAAACAATGGGTGGGAAAGCAATGTATCAAAGGCGAAGAAAGATCTTCAAATGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAGGCTGTACGACAAAGCCTGGACACATATCAAGCACGTGGAAAACTGCCTTTGGATTCTAGTTTAAGAATGTCTCAGAGATCTGCTTCACAAGTAGATTCATTGGGTTTTCCAACAGAGAAAGACTCAACTGAGGATGCAAATGGAACTACATTGCTTGGTACTGGGCTAAAGAATGAAGTTGGTGAATATAACTGTTTTCTCAATGTTATTATACAGTCTTTATGGCATTTAAGACGCTTTCGGGAGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCACGTTGGCAATCCTTGTGTTGTCTGTGCATTGTATGAGATCTTCACTGCTTTGGACCTTGCATCAAAGGACTCAAGGAGAGAAGCAGTAGCACCTACTTCCCTGCGAATAGCTCTAAGCAACCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAACGATGCTTCTGAGGTACTTGCAGTGATATTTGACTGCCTTCATCGTTCATTTACCCGTGGTTCAAGTGTTTCTGACACTGAGTCGGTGGAAAGTAATTGCATGGGATCTTGGGATTGTGCAAATAATACTTGTATAGCACATTCACTTTTCGGAATGGACATTTTTGAGCAAATGAACTGCTATCACTGTGGTCTCGAATCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAACGCATTACGAACAATGAAGGTTATGTGTTCTGAAAGTTCCTTTGATGAGCTATTGAACCTTGTGGAGATGAACCATCAATTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTTAACTACATCCATCACTTTCTTTCAACTCCACCTCATGTTTTTATGACAGTTCTTGGTTGGCAAAATACATGCGAGAGTGCTGATGATATAACAGCCACTGTGGCAGCCCTGAGCACTGCACTAGACATCAGTGTCCTATATCGAGGCTTAGATCCTAAAAGAACTCATAGCTTGGTATCAGTGGTTTGCTACTATGGCCAACATTATCATTGCTTTGCTTACAGTCATGACCATGATCAATGGATTATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCAGATGTTCTTACAATGTGTGAAAAAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4983 0.4411 MGHKKRNSAPRSKHSPATSPAAQFAVVGDGTASPEKQDSGNVPDHNSKTNNGVQNPNGIEFPPPPPPPPPPPQSDGPSSDYTAIKLECERALTAFRRGNHNRALKLMKELCGKQENAAHSAFAHRVQGFVAFKVAGILNDPTAKQRHVKNAVDSARKAVELCPNSVEYAHFYANLMLEVANDGKDYEEVVQECERALAIENPSDPGKESFQDESDQKLSTPEARVSHVQNELRQLIQKSNIASLSSWVKNLSNGEERFRLIPIRRPTEDPMELRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSPNEVDKDERGLDSSSAAGQSRRRHVNSKKNGSTAERRKWVQSYWSSMSVEMKKDMLRVRVSDLRSHFGSSKDTLPIDLLAEAVSYAEANKTWKFWVCCHCDEKFNDDESHSQHLAQAHMGMLSPNLQGHLPHNVDSEWIDMIHNCSWKPLDVSAAVKMLESRMKFKGSTLVEDSYFDHHTQDYYDCINDATDPYHEKEGLGYSLHNCTTESNNYCKAVASNVREGVENQLSMSHPFADSWPVSDDSERAKLLEKIHAVFEMLIKHKYLAASHLSKVIQFTMGEIQGLAAGSQFLNHGVDQTPMCICFLGASQLKKILQFLQELSHACGLGRYGDKGNGLMNEFHDINQGPEIKENIVLNRDASCLLLDECLLVTQVTFDAAQGTVLDNMTAQSSHDGISSDNDDFLSWIYSGSAIGDQLTSWMRTKEDNKHQGTEIIKMLDKEFYQLQTLCEKKSDRMSYEEALQTVEDLCLEEGKKREIVGDFVQQSYESVLRKRREELIESENDVMNVGNRFELDAISNVLQEAESMNVNQFGYEETYAGVTAQLCDLESGEEEEWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRNIAEMQQLELKLGPLSAYDYRAILLPLVKSYLRARLEEFAEKDAVEKSDAAREAFLAELARDAKKAKGGSENTRNVDKTKDKKKTKDHRKTKDLKASSGHEELLLQASSPDSNTVAPDSYFQDPELVSMNDNYLEQQEEEYRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAELQKKSSGICLEEVADKIQDAQLKTVADGTDVHDHVKLPIQEQSADENCCPSEVDSVIVTTKNGSLVPNKYSVDSADQKILHQPTVKQAGIPNGVVPENGHQLPDRRAGKKHKRHRNSSKMVDGKLESVSLEKNIEDAHTDRHSREHVKFHNDQDANNGWESNVSKAKKDLQMEDEEEERFQADLKKAVRQSLDTYQARGKLPLDSSLRMSQRSASQVDSLGFPTEKDSTEDANGTTLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLGRSRSEHDHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDTESVESNCMGSWDCANNTCIAHSLFGMDIFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCSESSFDELLNLVEMNHQLACDPEVGGCGKLNYIHHFLSTPPHVFMTVLGWQNTCESADDITATVAALSTALDISVLYRGLDPKRTHSLVSVVCYYGQHYHCFAYSHDHDQWIMYDDKTVKIIGGWADVLTMCEKGHLQPQVLFFEAVN* 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2127 1660 MobiDBLite consensus disorder prediction 1014 1028 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 1290 1320 - -
Amo11g2127 1660 Gene3D Tetratricopeptide repeat domain 80 212 IPR011990 GO:0005515
Amo11g2127 1660 Coils Coil 1042 1083 - -
Amo11g2127 1660 ProSitePatterns Zinc finger C2H2 type domain signature. 414 435 IPR013087 -
Amo11g2127 1660 Pfam Protein of unknown function (DUF629) 357 889 IPR006865 -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 307 351 - -
Amo11g2127 1660 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1327 1659 IPR028889 -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 976 994 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 206 220 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 1293 1320 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 976 1028 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 1 80 - -
Amo11g2127 1660 SUPERFAMILY Cysteine proteinases 1327 1657 IPR038765 -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 34 57 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 58 76 - -
Amo11g2127 1660 Pfam Protein of unknown function (DUF627) 90 201 IPR006866 -
Amo11g2127 1660 Coils Coil 1257 1277 - -
Amo11g2127 1660 Gene3D Cysteine proteinases 1308 1658 - -
Amo11g2127 1660 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1660 - -
Amo11g2127 1660 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1660 - -
Amo11g2127 1660 SUPERFAMILY Formin homology 2 domain (FH2 domain) 62 72 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 1175 1205 - -
Amo11g2127 1660 CDD Peptidase_C19 1418 1657 - -
Amo11g2127 1660 MobiDBLite consensus disorder prediction 200 221 - -
Amo11g2127 1660 Pfam Ubiquitin carboxyl-terminal hydrolase 1328 1635 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2127 Amo-Chr11 116794115 116804285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2127 80 1657 C2H2 Transcription Factor Family AT3G47890 56.614 0.0 1699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2127 - - adu:107493676 3256.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2127 11 116794115 116804285 Amo11g2127 11 116794115 116804285 ECH
Amo01g4176 01 117085006 117094896 Amo11g2127 11 116794115 116804285 hybridization