Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2114 ATGATGTATGTTCATCCTCTTCCTGTTTTCAACCACATCCATCATAGTATATACATTTGTTCCTTCTTTAACTTGATGGCCTCTGACCATAACTTTCTAGACTTTTTTCTCGAGGAGATAGAGTTTGAGAATGAAAGAGAGGATGATCAGTTTTATTCTTATGATTACAACAATGAATTGTCAAAATCTGAAAGCCAGCTATGTGTCCCTCCAGATCCCGTAGAAGATTTAGAATGGTTTCCGAATTTTCAAGACGATTTAATATCTTTAAAGAACTATGATGACTACATATCATCACAGCCACAGAATGATTATTTTGTTGATGATAACTCCAGTCAATCTCGCGAAAGCTTCGATCAACCGGCTACTCCTCACCAACAAAAGGAAACTAAGTCAAAGCATGAAGATACCGGCGTAAAAGACGATGAGAACGATGAGTATGTGTTGATGGATATGAACGGTCGTAGAAAAAGGAAAAAGTTCAGGACAACCGTTAACAGGAAGCCGAGGAAAAATATGAAATTTGAAATTAAAAGATGTACTCATTGCGAAGTAGAGGAAACTCCTCAATGGAGGAATGGACCCATGGGTCCCAAAACATTGTGCAATGCATGTGGTGTGCGCTACAAGTCTGGTAGGTTGTTACCGGAATATCGTCCCAAGGCAAGTCCATCTTTTGATAGCAGTAAACATTCCAATTATCACAAGAAGATAACAAGGAAGTTTCGTTAA 732 0.3839 MMYVHPLPVFNHIHHSIYICSFFNLMASDHNFLDFFLEEIEFENEREDDQFYSYDYNNELSKSESQLCVPPDPVEDLEWFPNFQDDLISLKNYDDYISSQPQNDYFVDDNSSQSRESFDQPATPHQQKETKSKHEDTGVKDDENDEYVLMDMNGRRKRKKFRTTVNRKPRKNMKFEIKRCTHCEVEETPQWRNGPMGPKTLCNACGVRYKSGRLLPEYRPKASPSFDSSKHSNYHKKITRKFR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2114 243 MobiDBLite consensus disorder prediction 220 243 - -
Amo11g2114 243 ProSitePatterns GATA-type zinc finger domain. 180 205 IPR000679 GO:0006355|GO:0043565
Amo11g2114 243 MobiDBLite consensus disorder prediction 126 143 - -
Amo11g2114 243 CDD ZnF_GATA 179 230 IPR000679 GO:0006355|GO:0043565
Amo11g2114 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 236 - -
Amo11g2114 243 MobiDBLite consensus disorder prediction 102 125 - -
Amo11g2114 243 Pfam GATA zinc finger 180 214 IPR000679 GO:0006355|GO:0043565
Amo11g2114 243 Gene3D - 176 224 IPR013088 GO:0006355|GO:0008270
Amo11g2114 243 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 15 241 - -
Amo11g2114 243 ProSiteProfiles GATA-type zinc finger domain profile. 174 210 IPR000679 GO:0006355|GO:0043565
Amo11g2114 243 MobiDBLite consensus disorder prediction 102 143 - -
Amo11g2114 243 SMART GATA_3 174 224 IPR000679 GO:0006355|GO:0043565
Amo11g2114 243 PANTHER GATA TRANSCRIPTION FACTOR 15 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2114 Amo-Chr11 116088817 116089548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2114 43 238 C2C2-Gata Transcription Factor Family AT4G36240 38.614 2.59e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo11g2114 GATA 5.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2114 - - aip:107611719 501.901