Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2100 ATGCATACTAGGATGATGAAGCATGCGGCTATGGAGATAGAATCAAGTGACAAGGGTTCTTTGGGGCCAGGGTTGAGCCCTCTGAGTGAGACTCTTTGGAGAGAAAAGACAAACACAGAGCTCATTGGAGACGTCTCGGCCAGGCTGACATGGAAGGACTTAACTGTGACTGTCACACTCAGCACGGCGGGTGAGACGCAGAATGTTCTAGAAGGTCTAACTGGCTACGCTGAGCCGGGGACCTTCACTGCTCTCATGGGGCCGTCTGGTTCCGGAAAATCTACCCTTCTTGATGCCTTGTCCGGTCGCCTCGCCGCCAATGCCTTCCTCTCTGGGACCGTTCTTCTCAATGGTCGCAAAGCCAATCTCTCTTTTGGCACTGCTGCTTATGTGACACAAGATGACAACTTGATTGGGACACTAACAGTGAGAGAGACGATTTCATACTCTGCTCAGTTGCGGCTACCGGACAAGATGTCGCCGTCGGATAAGGAAGCACTTGTTGAGAGCACCATAGTGGCAATGGGGCTTCAGGATTGTGCAGACACTGTGATTGGGAACTGGCACTTGCGAGGGATAAGCGGTGGAGAAAAGAGAAGGGTTAGCATTGCCTTGGAGATCTTGATGAGGCCTAGATTGCTCTTCCTTGATGAACCTACAAGTGGACTTGACAGTGCATCAGCTTTCTTTGTGACTCAAACATTACGTGCCTTGGCAAGGGATGGAAGAACCGTGATAGCTTCTATTCATCAACCTAGCAGTGAAGTTTTCGAACTATTTGATCAATTGTACTTGCTTTCTGGGGGTAAAACTGTCTATTTTGGCCACGCTTCTGCAGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCATCAGATCACTTTCTTAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTTAAAGGCTCCATGAAACTCAGGTTTGAGGCAAGTGATGATCCCCTTGATAAGATAACTACTGCTGAAGCTATCAGAACTCTCAATGAGTACTACCGAACTTCTCAGCATTCTTATGCTGCAATACAGAAAGTGGACGACATATCCAAAATTAAGGGAACCGTGCTCGATGCCGGAGGAAGTCAGGCTAGTTTCTTCAGGCAGTCATACACTTTAACCAAGCGCTCGTTGATTAACATGTCAAGAGATTTTGGTTACTACTGGCTTAGGCTTGTAATCTACATTGTGGTCACTATCTGCATTGGAACCATTTATTTGAACATCGGCACAAGCTATGACTCAATTCTGGCAAGGGGCTCATGTGCATCTTTTGTGTTTGGTTTTGTAACCTTCATGTCAATTGGTGGATTCCCGTCGTTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGCCACTATGGCGTGACAGCATTTGTGATCAGCAACACGTTATCCGCTATGCCATTCCTGATGCTAATCACCTTTCTCTCGGCTACCATTTGTTACTTCATGGTTCGCCTGCATCCCGGCTTTTCACATTATGTGTTCTTTGTCTTGTGCCTTTTTGCTAGCGTTATGGTGGTAGAAAGCTTAATGATGGCCATTGCTAGTGTTGTCCCCAACTTCCTCATGGGTATCATAACTGGAGCAGGGATTCAGGGTATATTCATGTTAGTCTCTGGCTTCTTTCGGCTCCCACATGATATCCCAAAGCCATTTTGGCGCTATCCAATGTCATATATAAGTTTCCATTTTTGGTCACTACAGGGACAATACCAAAATGATCTGAGGGGCTTGCTATTCGACAACCAATCGCCGGACCTTCCCAAAATACCGGGCGAATACATCCTGGAGAACGTTTTCCAAATCAATGTGAACCGGTCGAAGTGGATCGACCTAGGGGTGATCTTCAGCATGATTCTCGTGTACCGCATCATCTTCTTTGTGATGATTAAGGTCAATGAGGATGTCACTCCTTGGGTCAGAGGTTACGTAGCAAGAAGGAGAATGCAGAACAAGAATATTGCTCCTGATGCTCTCACTCAATCTCCATCACTGAGAGCATATGTTAATAGGGACACTCGTAGAAGGTAG 2088 0.4646 MHTRMMKHAAMEIESSDKGSLGPGLSPLSETLWREKTNTELIGDVSARLTWKDLTVTVTLSTAGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSGRLAANAFLSGTVLLNGRKANLSFGTAAYVTQDDNLIGTLTVRETISYSAQLRLPDKMSPSDKEALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGHASAAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPLDKITTAEAIRTLNEYYRTSQHSYAAIQKVDDISKIKGTVLDAGGSQASFFRQSYTLTKRSLINMSRDFGYYWLRLVIYIVVTICIGTIYLNIGTSYDSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLMLITFLSATICYFMVRLHPGFSHYVFFVLCLFASVMVVESLMMAIASVVPNFLMGIITGAGIQGIFMLVSGFFRLPHDIPKPFWRYPMSYISFHFWSLQGQYQNDLRGLLFDNQSPDLPKIPGEYILENVFQINVNRSKWIDLGVIFSMILVYRIIFFVMIKVNEDVTPWVRGYVARRRMQNKNIAPDALTQSPSLRAYVNRDTRRR* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2100 695 SMART AAA_5 79 250 IPR003593 -
Amo11g2100 695 Pfam ABC transporter 72 221 IPR003439 GO:0005524
Amo11g2100 695 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524
Amo11g2100 695 PANTHER OS04G0528300 PROTEIN 15 688 - -
Amo11g2100 695 Pfam ABC-2 type transporter 383 589 IPR013525 GO:0016020|GO:0140359
Amo11g2100 695 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 293 IPR003439 GO:0005524
Amo11g2100 695 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 15 688 - -
Amo11g2100 695 MobiDBLite consensus disorder prediction 1 22 - -
Amo11g2100 695 CDD ABCG_EPDR 46 275 - -
Amo11g2100 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 285 IPR027417 -
Amo11g2100 695 Pfam ABC-2 type transporter 250 306 IPR043926 GO:0140359
Amo11g2100 695 Gene3D - 43 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2100 Amo-Chr11 115343147 115348613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2100 80 254 Calmodulin-binding Proteins AT2G36910 34.409 2.62e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2100 K05681 - gmx:100803731 1211.05