Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2088 ATGTGTAGCACCTTCGCCGCCGCCGCAGACTCCTCCATCTCCGGCGACGGTGACTCCCCCGCCGCCGGCGAGATTATGCTGTTCGGCGTTAGGGTGGTGGTGGACTCCATGAGGAAAAGCGTCAGTATGAACAATCTGTCGCAGTACGTGCATCCTCAAGATGAMTCCAACAACAACAAAGACGCTGCCTTCTCCGCCACCGGTTACGCGTCCGCCGACGACGCCGCTCCTCWCAACTCCGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGTGTTCCSTGGACGGAGGAAGAGCACAAGCTRTTCCTGGTKGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGGATCTCTAGGAACTACGTCAAGACTCGGACGCCCACGCAGGTCGCCAGCCATGCTCAGAAGTACTTCCTCCGCCGGAGCAATCTCAACCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGATTCGGTCTCTTCGATCCCAATGGAGGAAGAACAGATCCAGAACGGAGACAGTGTGCCTCATTCACAGCCTCTGTGCCCTGCAGCCCCTGAGAATAGCAACACCAATGGATTTCCGATGGTGCCGGTGTATCCATTGGGGGTTGGTCCAGGTGTGATTTCATCAGTCGAAGCTGGGAATCCAATGGATGAACTAACTCTAGGACAGGCAAACATGGAGCTTAATGCGCAAACCAAGCTACTCCATCCGATTCCTGTTGCCTCAAATCCTAAAACCTGCACCGTGTCTGATGTTGCCTCCGGCTCTAATTCGCCCCTCGACTTGCCAACACTGTCCCTGGGACTATCCTTCACATCTGATCAAAGACAGACTCCATCAAGACATTCGGCTTTCCATTCGATTCCGAGTTTAAATAACGGAGATAGCGTCATAAGTGTTGCTTGA 918 0.5447 MCSTFAAAADSSISGDGDSPAAGEIMLFGVRVVVDSMRKSVSMNNLSQYVHPQDXSNNNKDAAFSATGYASADDAAPXNSGKNRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSSIPMEEEQIQNGDSVPHSQPLCPAAPENSNTNGFPMVPVYPLGVGPGVISSVEAGNPMDELTLGQANMELNAQTKLLHPIPVASNPKTCTVSDVASGSNSPLDLPTLSLGLSFTSDQRQTPSRHSAFHSIPSLNNGDSVISVA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2088 305 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Amo11g2088 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Amo11g2088 305 PANTHER KIN2 17 305 - -
Amo11g2088 305 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 17 305 - -
Amo11g2088 305 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Amo11g2088 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Amo11g2088 305 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Amo11g2088 305 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Amo11g2088 305 MobiDBLite consensus disorder prediction 49 65 - -
Amo11g2088 305 CDD SANT 93 138 IPR001005 -
Amo11g2088 305 Gene3D - 92 144 - -
Amo11g2088 305 MobiDBLite consensus disorder prediction 49 92 - -
Amo11g2088 305 SMART sant 90 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2088 Amo-Chr11 114594640 114597430 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo11g2088 Myb_DNA-binding 8.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2088 - - aip:107632799 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2422 01 81313155 81315678 Amo11g2088 11 114594640 114597430 hybridization