Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2074 ATGGCTGGTGGTGAAGTTTTGAGGCAGAATTTACCTGAGAAGCTTGAGGAATCTCCTTCTGGTGCAAATGAGCTTCATGTTTTAGCTGTTGATGATAGTCTTGTGGATAGAAAGGTCATTGAACGTTTGCTCAAGATATCTTCTTGCAAAGTGACAGTGGTGGAGAGTGGAACTAGAGCTCTTCAGTATTTGGGGTTGGATGGGGATAAGAAAAGCTCCATTGGATTTGATAGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCGGGGATGACTGGTTATGATCTTCTCAAGAAAATCAAGCAGGAATCGTCTGTTTTTAGAGAAATTCCAGTGGTGATCATGTCATCGGAGAATATCTTGACTAGAATTGATAGATGCTTGGAGGAAGGAGCAGAGGACTTTCTATTAAAGCCGGTGAAGTTATCCGATGTAAGACGCTTAAAAGATTTCATCATGAGAGGTGAAGTGAAGGAAGGAGAGAAAAGATGCTGCAAAAGATCGCGATCCGAAGATTGCAGCCCATCGTCAATGACTCATCCCTGCGATTCATCGCTATTGTCATCGTTGTCTTCGTCTTCAGTACTTTCACCATTGTCACCATCTACCTTGTCCTCCAAGAAATCCAGATTGTGA 642 0.4206 MAGGEVLRQNLPEKLEESPSGANELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGDKKSSIGFDSVKVNLIMTDYSMPGMTGYDLLKKIKQESSVFREIPVVIMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKEGEKRCCKRSRSEDCSPSSMTHPCDSSLLSSLSSSSVLSPLSPSTLSSKKSRL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2074 213 CDD REC_typeA_ARR 27 150 - -
Amo11g2074 213 ProSiteProfiles Response regulatory domain profile. 26 155 IPR001789 GO:0000160
Amo11g2074 213 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 213 IPR045279 GO:0009736
Amo11g2074 213 MobiDBLite consensus disorder prediction 191 213 - -
Amo11g2074 213 Gene3D - 25 180 - -
Amo11g2074 213 SMART REC_2 25 151 IPR001789 GO:0000160
Amo11g2074 213 Pfam Response regulator receiver domain 27 148 IPR001789 GO:0000160
Amo11g2074 213 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 9 213 - -
Amo11g2074 213 SUPERFAMILY CheY-like 23 154 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2074 Amo-Chr11 113376641 113378582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2074 4 169 Response Regulator Gene Family AT3G48100 69.643 3.90e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo11g2074 Response_reg 7.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2074 K14492 - gmx:100527518 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2074 11 113376641 113378582 Amo11g2074 11 113376641 113378582 ECH
Amo01g2287 01 73854908 73859385 Amo11g2074 11 113376641 113378582 hybridization