Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2051 ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAAGTGCTGTAGTGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCATAGGGGTAGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACCAATCATCTATTAAGAAAAATAAAAAAGCTTAACACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCAGAACATCTACCATTATACCCACAATGATTGGTCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTATGGTAGGCCATAAATTGGGCGAATTTTCACCTACTCTATACTTCCGAGGACATGCGAAAAATGATAATAGGTCTCGTCGTTAA 633 0.4044 MPLGTAIHNIEITLGKGGQLARAASAVVKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLASCSKRSSYEPCRSSHRGSEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTNHLLRKIKKLNTKAEKEIIITWSRTSTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLYFRGHAKNDNRSRR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2051 210 Gene3D 30s Ribosomal Protein S19; Chain A 112 210 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 MobiDBLite consensus disorder prediction 81 95 - -
Amo11g2051 210 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 1 128 - -
Amo11g2051 210 SUPERFAMILY Ribosomal protein S19 129 202 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 SMART Ribosomal_L2_C_2 1 108 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 SUPERFAMILY Translation proteins SH3-like domain 1 128 IPR008991 -
Amo11g2051 210 Gene3D - 1 63 IPR014722 -
Amo11g2051 210 PRINTS Ribosomal protein S19 family signature 171 183 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 PRINTS Ribosomal protein S19 family signature 151 170 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 PRINTS Ribosomal protein S19 family signature 183 198 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 Pfam Ribosomal protein S19 129 201 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 MobiDBLite consensus disorder prediction 79 118 - -
Amo11g2051 210 Pfam Ribosomal Proteins L2, C-terminal domain 1 106 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 Hamap 30S ribosomal protein S19 [rpsS]. 111 207 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo11g2051 210 TIGRFAM rpsS_bact: ribosomal protein uS19 131 210 IPR005732 GO:0003735|GO:0006412|GO:0015935
Amo11g2051 210 ProSitePatterns Ribosomal protein S19 signature. 171 195 IPR020934 GO:0003723
Amo11g2051 210 PANTHER RIBOSOMAL PROTEIN L2 1 128 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2051 Amo-Chr11 111290048 111290811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2051 143 195 Cytoplasmic Ribosomal Protein Gene Family AT5G63070 43.396 1.46e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2051 K02886 - fve:10251562 202.601