Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2044 ATGGCAACATTTGGAGGCACAACACAGAAGTGCAGAGCATGTGAAAAGAAGGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTCTACCATAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCATTTGAGGGAGTTCTATACTGCAAGCCTCATTTTGATCAACTTTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGAGTTCCAAGAACTGCAAGGATTGAAAGATCTGCTGATCAGGTACAAAGCAATAGCAAGGTTTCAAGATTGTTTGCAGGGACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTATACCCTATTGAAAAGGTGGGTGTTGATGGGAAATGTTACCATAAGGGATGCTTCAGGTGCAGCCATGGAGGGTGTGTAATAAGCCCATCAAATTATGTGGCCCATGAACATCGCCTTTATTGCAAGCACCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGCCAATTTGACATTCATCAAAATGGCCATAGCAATGGCCACGGGATTTCTGAGAATGATAACACAAATTCTTCTTATGAGCAGTAA 603 0.4212 MATFGGTTQKCRACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGVPRTARIERSADQVQSNSKVSRLFAGTQEKCVGCKKTVYPIEKVGVDGKCYHKGCFRCSHGGCVISPSNYVAHEHRLYCKHHHTQLFKQKGNFSQFDIHQNGHSNGHGISENDNTNSSYEQ* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2044 200 Gene3D Cysteine Rich Protein 104 174 - -
Amo11g2044 200 Gene3D Cysteine Rich Protein 6 75 - -
Amo11g2044 200 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Amo11g2044 200 PANTHER OS06G0237300 PROTEIN 1 181 IPR045268 GO:0051015
Amo11g2044 200 MobiDBLite consensus disorder prediction 176 200 - -
Amo11g2044 200 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Amo11g2044 200 Pfam LIM domain 11 65 IPR001781 -
Amo11g2044 200 Pfam LIM domain 110 165 IPR001781 -
Amo11g2044 200 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 181 - -
Amo11g2044 200 SMART lim_4 10 62 IPR001781 -
Amo11g2044 200 SMART lim_4 109 161 IPR001781 -
Amo11g2044 200 CDD LIM1_SF3 7 68 - -
Amo11g2044 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Amo11g2044 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Amo11g2044 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Amo11g2044 200 CDD LIM2_SF3 110 170 - -
Amo11g2044 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Amo11g2044 200 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2044 Amo-Chr11 110827760 110829298 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Amo11g2044 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2044 K09377 - gmx:100792627 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2044 11 110827760 110829298 Amo11g2044 11 110827760 110829298 ECH
Amo01g2586 01 92000713 92001883 Amo11g2044 11 110827760 110829298 hybridization